Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8063 | 3' | -61.3 | NC_001973.1 | + | 23684 | 0.76 | 0.193731 |
Target: 5'- -gGGCCUCCGCGcgucGAcGCGCCAG-CUGCg -3' miRNA: 3'- uaCUGGAGGCGC----CU-CGCGGUCuGGCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 80133 | 0.73 | 0.294701 |
Target: 5'- -cGACCagauucucCCGCGGGGCGCCGaACuCGCg -3' miRNA: 3'- uaCUGGa-------GGCGCCUCGCGGUcUG-GCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 70548 | 0.72 | 0.351297 |
Target: 5'- -cGGCCUCC-CGuGAGC-CgGGACCGCa -3' miRNA: 3'- uaCUGGAGGcGC-CUCGcGgUCUGGCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 31990 | 0.72 | 0.351297 |
Target: 5'- -cGAUCUCCGCc--GCGCuCAGGCCGUg -3' miRNA: 3'- uaCUGGAGGCGccuCGCG-GUCUGGCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 110358 | 0.71 | 0.382356 |
Target: 5'- --cGCCUCgGCGGccGCGUCGGACgGCg -3' miRNA: 3'- uacUGGAGgCGCCu-CGCGGUCUGgCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 9924 | 0.71 | 0.390401 |
Target: 5'- cGUGACCUgCCGCGGgaAGuUGCCc-GCCGCg -3' miRNA: 3'- -UACUGGA-GGCGCC--UC-GCGGucUGGCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 27866 | 0.71 | 0.390401 |
Target: 5'- -cGGCCgcggCCGCGG-GCGCgGGcgcgcucucGCCGCg -3' miRNA: 3'- uaCUGGa---GGCGCCuCGCGgUC---------UGGCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 52718 | 0.71 | 0.40682 |
Target: 5'- --aGCCgCCGCagcucGAGCGCCAGGCgGCg -3' miRNA: 3'- uacUGGaGGCGc----CUCGCGGUCUGgCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 82869 | 0.71 | 0.40682 |
Target: 5'- ----aCUCCGCGGcGGCGCCuccGCCGCc -3' miRNA: 3'- uacugGAGGCGCC-UCGCGGuc-UGGCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 17109 | 0.7 | 0.449697 |
Target: 5'- gAUGGCgUCCcaGCGGAGCGCgGGcGCCacGCg -3' miRNA: 3'- -UACUGgAGG--CGCCUCGCGgUC-UGG--CG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 53394 | 0.7 | 0.471143 |
Target: 5'- --cGCCUCCucgcccgccggcacgGgCGGAGCGCCGGGCgCGUc -3' miRNA: 3'- uacUGGAGG---------------C-GCCUCGCGGUCUG-GCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 59974 | 0.69 | 0.476585 |
Target: 5'- -aGGCagCCGCcGGGC-CCAGACCGCg -3' miRNA: 3'- uaCUGgaGGCGcCUCGcGGUCUGGCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 8611 | 0.69 | 0.476585 |
Target: 5'- -cGGCCgcgCCGCGGAcGaCGCCgccgAGGCCGa -3' miRNA: 3'- uaCUGGa--GGCGCCU-C-GCGG----UCUGGCg -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 529 | 0.69 | 0.485725 |
Target: 5'- cGUGACCUCCGU---GCGCCAauUCGCg -3' miRNA: 3'- -UACUGGAGGCGccuCGCGGUcuGGCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 152385 | 0.69 | 0.485725 |
Target: 5'- -cGGCCggCGCGGgcgGGCGCgGGGCgGCg -3' miRNA: 3'- uaCUGGagGCGCC---UCGCGgUCUGgCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 69924 | 0.69 | 0.513624 |
Target: 5'- -aGGCCgCCGCGGcGCGUgAGcaggccccuGCCGCg -3' miRNA: 3'- uaCUGGaGGCGCCuCGCGgUC---------UGGCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 95428 | 0.69 | 0.513624 |
Target: 5'- -gGGCga-CGCGGAGCGC--GACCGCg -3' miRNA: 3'- uaCUGgagGCGCCUCGCGguCUGGCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 67594 | 0.68 | 0.538319 |
Target: 5'- uUGGCCgucguucgguuggCgGCGGAGCugguGCCGG-CCGCg -3' miRNA: 3'- uACUGGa------------GgCGCCUCG----CGGUCuGGCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 157947 | 0.68 | 0.551786 |
Target: 5'- aAUGACCUCgGCGGucgAGuCGCCcGGCgUGCu -3' miRNA: 3'- -UACUGGAGgCGCC---UC-GCGGuCUG-GCG- -5' |
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8063 | 3' | -61.3 | NC_001973.1 | + | 126047 | 0.68 | 0.561467 |
Target: 5'- uUGAgCUCUGCcGAcGCGUaAGACCGCa -3' miRNA: 3'- uACUgGAGGCGcCU-CGCGgUCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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