miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8063 3' -61.3 NC_001973.1 + 529 0.69 0.485725
Target:  5'- cGUGACCUCCGU---GCGCCAauUCGCg -3'
miRNA:   3'- -UACUGGAGGCGccuCGCGGUcuGGCG- -5'
8063 3' -61.3 NC_001973.1 + 7908 0.68 0.561467
Target:  5'- -aGGCgUUCuguugcgagGCGGAGCGCguGugCGCg -3'
miRNA:   3'- uaCUGgAGG---------CGCCUCGCGguCugGCG- -5'
8063 3' -61.3 NC_001973.1 + 8210 0.67 0.640058
Target:  5'- uUGGCg-CCGCuGGGcCGCCAaGCCGCg -3'
miRNA:   3'- uACUGgaGGCGcCUC-GCGGUcUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 8611 0.69 0.476585
Target:  5'- -cGGCCgcgCCGCGGAcGaCGCCgccgAGGCCGa -3'
miRNA:   3'- uaCUGGa--GGCGCCU-C-GCGG----UCUGGCg -5'
8063 3' -61.3 NC_001973.1 + 9924 0.71 0.390401
Target:  5'- cGUGACCUgCCGCGGgaAGuUGCCc-GCCGCg -3'
miRNA:   3'- -UACUGGA-GGCGCC--UC-GCGGucUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 10409 0.67 0.610442
Target:  5'- cGUGACCagCC-CGG-GCGUCAGACaGCu -3'
miRNA:   3'- -UACUGGa-GGcGCCuCGCGGUCUGgCG- -5'
8063 3' -61.3 NC_001973.1 + 17109 0.7 0.449697
Target:  5'- gAUGGCgUCCcaGCGGAGCGCgGGcGCCacGCg -3'
miRNA:   3'- -UACUGgAGG--CGCCUCGCGgUC-UGG--CG- -5'
8063 3' -61.3 NC_001973.1 + 17873 0.67 0.620308
Target:  5'- -aGGCgUCCGCGucGCGCC--GCUGCg -3'
miRNA:   3'- uaCUGgAGGCGCcuCGCGGucUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 21261 0.66 0.679429
Target:  5'- cAUGuCCaaaucgagCCGCGGcgucCGCCGGGCCGUc -3'
miRNA:   3'- -UACuGGa-------GGCGCCuc--GCGGUCUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 23561 0.67 0.640058
Target:  5'- -cGACCgcagccggCCgGCGGAcGCGCC-GcCCGCg -3'
miRNA:   3'- uaCUGGa-------GG-CGCCU-CGCGGuCuGGCG- -5'
8063 3' -61.3 NC_001973.1 + 23684 0.76 0.193731
Target:  5'- -gGGCCUCCGCGcgucGAcGCGCCAG-CUGCg -3'
miRNA:   3'- uaCUGGAGGCGC----CU-CGCGGUCuGGCG- -5'
8063 3' -61.3 NC_001973.1 + 24260 0.67 0.649929
Target:  5'- cUGACCgugaucuauugUCCGCGcGGGCGCCu--CgGCg -3'
miRNA:   3'- uACUGG-----------AGGCGC-CUCGCGGucuGgCG- -5'
8063 3' -61.3 NC_001973.1 + 27866 0.71 0.390401
Target:  5'- -cGGCCgcggCCGCGG-GCGCgGGcgcgcucucGCCGCg -3'
miRNA:   3'- uaCUGGa---GGCGCCuCGCGgUC---------UGGCG- -5'
8063 3' -61.3 NC_001973.1 + 31990 0.72 0.351297
Target:  5'- -cGAUCUCCGCc--GCGCuCAGGCCGUg -3'
miRNA:   3'- uaCUGGAGGCGccuCGCG-GUCUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 39820 0.67 0.626232
Target:  5'- -cGGCCUCCGacaGGGgcuccgcGCGUcgaucgugcagaugCAGACCGCc -3'
miRNA:   3'- uaCUGGAGGCg--CCU-------CGCG--------------GUCUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 45851 0.67 0.649929
Target:  5'- -gGGCCUgggcgUCGCGGGcgcGCGCUccucGGCCGCg -3'
miRNA:   3'- uaCUGGA-----GGCGCCU---CGCGGu---CUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 47768 0.66 0.67845
Target:  5'- -cGGCCUCCuCGGcGCuccucagguccagGCCGG-CCGCg -3'
miRNA:   3'- uaCUGGAGGcGCCuCG-------------CGGUCuGGCG- -5'
8063 3' -61.3 NC_001973.1 + 52718 0.71 0.40682
Target:  5'- --aGCCgCCGCagcucGAGCGCCAGGCgGCg -3'
miRNA:   3'- uacUGGaGGCGc----CUCGCGGUCUGgCG- -5'
8063 3' -61.3 NC_001973.1 + 53394 0.7 0.471143
Target:  5'- --cGCCUCCucgcccgccggcacgGgCGGAGCGCCGGGCgCGUc -3'
miRNA:   3'- uacUGGAGG---------------C-GCCUCGCGGUCUG-GCG- -5'
8063 3' -61.3 NC_001973.1 + 56366 0.66 0.698928
Target:  5'- -cGACUcggcgCCGCGcucGGCGCCAGGCuCGg -3'
miRNA:   3'- uaCUGGa----GGCGCc--UCGCGGUCUG-GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.