miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8064 5' -50.2 NC_001973.1 + 7919 0.67 0.990988
Target:  5'- uGCGAGGCGgagcGCGugUgcGCGGCcgGCg- -3'
miRNA:   3'- gCGUUUCGU----UGUugA--UGCCGuaCGgg -5'
8064 5' -50.2 NC_001973.1 + 103929 0.67 0.990988
Target:  5'- gCGCGucGUcGCGGCgcGgGGCGUGCCg -3'
miRNA:   3'- -GCGUuuCGuUGUUGa-UgCCGUACGGg -5'
8064 5' -50.2 NC_001973.1 + 133188 0.67 0.990988
Target:  5'- aGCAGAGCGucgAACgccaaguCGGUgagaAUGCCCa -3'
miRNA:   3'- gCGUUUCGUug-UUGau-----GCCG----UACGGG- -5'
8064 5' -50.2 NC_001973.1 + 78159 0.67 0.990225
Target:  5'- uCGCGGAGCGAUcguguuCUGCaucaugcugggcacgGGCAUGCgCa -3'
miRNA:   3'- -GCGUUUCGUUGuu----GAUG---------------CCGUACGgG- -5'
8064 5' -50.2 NC_001973.1 + 66814 0.67 0.989689
Target:  5'- gCGCGcAGUu-CGuCUugGGCAaGCCCg -3'
miRNA:   3'- -GCGUuUCGuuGUuGAugCCGUaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 111249 0.67 0.989689
Target:  5'- gGCGAGGgGGuCGACgcggACGcGC-UGCCCg -3'
miRNA:   3'- gCGUUUCgUU-GUUGa---UGC-CGuACGGG- -5'
8064 5' -50.2 NC_001973.1 + 94410 0.67 0.989689
Target:  5'- cCGCGgcGCcGCccgGACcgGCGGCGUugGCCCg -3'
miRNA:   3'- -GCGUuuCGuUG---UUGa-UGCCGUA--CGGG- -5'
8064 5' -50.2 NC_001973.1 + 84320 0.67 0.988249
Target:  5'- cCGCccAGGaCGuCAGCUACGGCcgGCUg -3'
miRNA:   3'- -GCGu-UUC-GUuGUUGAUGCCGuaCGGg -5'
8064 5' -50.2 NC_001973.1 + 48073 0.67 0.988249
Target:  5'- gGCGAGGacGCGuucacGCUGCGGUacGUGCUCg -3'
miRNA:   3'- gCGUUUCguUGU-----UGAUGCCG--UACGGG- -5'
8064 5' -50.2 NC_001973.1 + 95457 0.68 0.986658
Target:  5'- aCGCGcuGCuGCucgaggAGCUGCGGCucAUGCUCg -3'
miRNA:   3'- -GCGUuuCGuUG------UUGAUGCCG--UACGGG- -5'
8064 5' -50.2 NC_001973.1 + 38323 0.68 0.986658
Target:  5'- gCGCAcuGCGcCAACaugGCGGCgucaGUGCCg -3'
miRNA:   3'- -GCGUuuCGUuGUUGa--UGCCG----UACGGg -5'
8064 5' -50.2 NC_001973.1 + 96763 0.68 0.984905
Target:  5'- gGCGAgucgGGCGGCGug-GCGGCcaacgcgGCCCa -3'
miRNA:   3'- gCGUU----UCGUUGUugaUGCCGua-----CGGG- -5'
8064 5' -50.2 NC_001973.1 + 95813 0.68 0.984905
Target:  5'- aCGCGGacGGCAACccguucacgGGC-GCGGCGacggGCCCg -3'
miRNA:   3'- -GCGUU--UCGUUG---------UUGaUGCCGUa---CGGG- -5'
8064 5' -50.2 NC_001973.1 + 131157 0.68 0.982983
Target:  5'- aGCAAuuucaaguGGCAcaGCGuCUGCaguuucgagGGCGUGCCCc -3'
miRNA:   3'- gCGUU--------UCGU--UGUuGAUG---------CCGUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 158051 0.68 0.982983
Target:  5'- uGCGuAGCGACGACUcgccgaggauACGGCGacUGCa- -3'
miRNA:   3'- gCGUuUCGUUGUUGA----------UGCCGU--ACGgg -5'
8064 5' -50.2 NC_001973.1 + 44595 0.68 0.982983
Target:  5'- cCGC--GGCGGCGGCgaGCgGGCucgGCCCg -3'
miRNA:   3'- -GCGuuUCGUUGUUGa-UG-CCGua-CGGG- -5'
8064 5' -50.2 NC_001973.1 + 69838 0.68 0.982983
Target:  5'- uCGCAcuGCAAC-GCcACGGCGUuuugaGCCUg -3'
miRNA:   3'- -GCGUuuCGUUGuUGaUGCCGUA-----CGGG- -5'
8064 5' -50.2 NC_001973.1 + 7755 0.68 0.980882
Target:  5'- gCGCGAAccGCGGCGGCgGCGGCGUcgaggaGCUg -3'
miRNA:   3'- -GCGUUU--CGUUGUUGaUGCCGUA------CGGg -5'
8064 5' -50.2 NC_001973.1 + 22065 0.68 0.980882
Target:  5'- gGacuGGGCGGCGugUGCGGaGUGCgCCg -3'
miRNA:   3'- gCgu-UUCGUUGUugAUGCCgUACG-GG- -5'
8064 5' -50.2 NC_001973.1 + 54645 0.68 0.980882
Target:  5'- uGguGAGCAGCAcGCUgaacACGcGCGUgucGCCCa -3'
miRNA:   3'- gCguUUCGUUGU-UGA----UGC-CGUA---CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.