miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8064 5' -50.2 NC_001973.1 + 46696 0.79 0.573001
Target:  5'- uGCAAGGC-GCG--UACGGCAUGUCCa -3'
miRNA:   3'- gCGUUUCGuUGUugAUGCCGUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 111936 0.77 0.667641
Target:  5'- uGCGcGGCGGCGACUucuccgacccgGCGGCcgagcgcGUGCCCa -3'
miRNA:   3'- gCGUuUCGUUGUUGA-----------UGCCG-------UACGGG- -5'
8064 5' -50.2 NC_001973.1 + 57864 0.77 0.679298
Target:  5'- aGUAGAGCGGCcaauuCUGCGGaCGUGCUCu -3'
miRNA:   3'- gCGUUUCGUUGuu---GAUGCC-GUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 86896 0.77 0.689851
Target:  5'- aGCGcGGCGACGACUugaacuacauccACGGCGUuuacucGCCCa -3'
miRNA:   3'- gCGUuUCGUUGUUGA------------UGCCGUA------CGGG- -5'
8064 5' -50.2 NC_001973.1 + 17420 0.76 0.704536
Target:  5'- uCGCGAAGCAgugagcgaACAGCUcguugccgccgaacgGCGGCAUGCaCUc -3'
miRNA:   3'- -GCGUUUCGU--------UGUUGA---------------UGCCGUACG-GG- -5'
8064 5' -50.2 NC_001973.1 + 86849 0.75 0.761689
Target:  5'- uCGCGAGGCccaguGCucgcGCUGCGGCAUGgUCg -3'
miRNA:   3'- -GCGUUUCGu----UGu---UGAUGCCGUACgGG- -5'
8064 5' -50.2 NC_001973.1 + 54978 0.75 0.790813
Target:  5'- gGCcgGAGGCGGCGGCgGCGGCAUuucGCUCa -3'
miRNA:   3'- gCG--UUUCGUUGUUGaUGCCGUA---CGGG- -5'
8064 5' -50.2 NC_001973.1 + 135923 0.74 0.800225
Target:  5'- uCGCAGAGCGggcGCGGCgAUGGCGcGCCa -3'
miRNA:   3'- -GCGUUUCGU---UGUUGaUGCCGUaCGGg -5'
8064 5' -50.2 NC_001973.1 + 55224 0.74 0.818542
Target:  5'- gGCgGAGGCGGCGGCggcggGCGGCGagagGCCUg -3'
miRNA:   3'- gCG-UUUCGUUGUUGa----UGCCGUa---CGGG- -5'
8064 5' -50.2 NC_001973.1 + 136464 0.74 0.827429
Target:  5'- gCGCGAAGUAGgccacgUAGCcgGCGGCGUGgCCg -3'
miRNA:   3'- -GCGUUUCGUU------GUUGa-UGCCGUACgGG- -5'
8064 5' -50.2 NC_001973.1 + 61106 0.73 0.852899
Target:  5'- cCGaCGGAGCAGCGGCggcggggcGCGGCGUcGCUCc -3'
miRNA:   3'- -GC-GUUUCGUUGUUGa-------UGCCGUA-CGGG- -5'
8064 5' -50.2 NC_001973.1 + 61685 0.73 0.852899
Target:  5'- gCGCGAAGCGGCGu---CGGCGcGCUCg -3'
miRNA:   3'- -GCGUUUCGUUGUugauGCCGUaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 112750 0.73 0.868806
Target:  5'- gGCGAA-CGGCGACcgUGCGGCcgGCUCg -3'
miRNA:   3'- gCGUUUcGUUGUUG--AUGCCGuaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 70059 0.73 0.868806
Target:  5'- gCGUucuGAAGCGugGugUACGGCAgggcggGCUCg -3'
miRNA:   3'- -GCG---UUUCGUugUugAUGCCGUa-----CGGG- -5'
8064 5' -50.2 NC_001973.1 + 143115 0.73 0.876416
Target:  5'- gCGCGgacGAGCAGuuCGACUugGaggcacaaucguGCGUGCCCg -3'
miRNA:   3'- -GCGU---UUCGUU--GUUGAugC------------CGUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 77032 0.73 0.876416
Target:  5'- gCGCAAGGaCGAUAGCUccaaaGCGGCcaacgcGUGCCa -3'
miRNA:   3'- -GCGUUUC-GUUGUUGA-----UGCCG------UACGGg -5'
8064 5' -50.2 NC_001973.1 + 35984 0.73 0.876416
Target:  5'- cCGCGGA-CGAgGugaGCGGCAUGCCCg -3'
miRNA:   3'- -GCGUUUcGUUgUugaUGCCGUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 7254 0.72 0.88379
Target:  5'- aGCAGAugcGCAGCgGGCUcggcgcGCGGCGcGCCCg -3'
miRNA:   3'- gCGUUU---CGUUG-UUGA------UGCCGUaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 93723 0.72 0.890921
Target:  5'- cCGCGAAGCGcuaccGCGACga-GGCGagccGCCCg -3'
miRNA:   3'- -GCGUUUCGU-----UGUUGaugCCGUa---CGGG- -5'
8064 5' -50.2 NC_001973.1 + 124194 0.72 0.897805
Target:  5'- gCGCGAGGUcGCGGCgGCGcGCcgGCUCg -3'
miRNA:   3'- -GCGUUUCGuUGUUGaUGC-CGuaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.