miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8064 5' -50.2 NC_001973.1 + 3257 0.7 0.956624
Target:  5'- uGCGuuuGCAACuGCUGCaaGGCGgcGCCCa -3'
miRNA:   3'- gCGUuu-CGUUGuUGAUG--CCGUa-CGGG- -5'
8064 5' -50.2 NC_001973.1 + 3836 0.67 0.992154
Target:  5'- gGCucgcCGGCGAUUugGGCcgGCUCg -3'
miRNA:   3'- gCGuuucGUUGUUGAugCCGuaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 5752 0.67 0.990988
Target:  5'- cCGcCGAAGCGGCccacggcGCUACGcGCGUcGCCg -3'
miRNA:   3'- -GC-GUUUCGUUGu------UGAUGC-CGUA-CGGg -5'
8064 5' -50.2 NC_001973.1 + 6416 0.72 0.897805
Target:  5'- uGCGcGGCGGCGGCgcgccgACGaGCGcGCCCg -3'
miRNA:   3'- gCGUuUCGUUGUUGa-----UGC-CGUaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 6507 0.66 0.996317
Target:  5'- gGCuGGGCGGC-GCg--GGCGUGCCg -3'
miRNA:   3'- gCGuUUCGUUGuUGaugCCGUACGGg -5'
8064 5' -50.2 NC_001973.1 + 7142 0.69 0.970512
Target:  5'- uCGCGAcgcGGCcuCAACU-CGGCGUcGCCg -3'
miRNA:   3'- -GCGUU---UCGuuGUUGAuGCCGUA-CGGg -5'
8064 5' -50.2 NC_001973.1 + 7254 0.72 0.88379
Target:  5'- aGCAGAugcGCAGCgGGCUcggcgcGCGGCGcGCCCg -3'
miRNA:   3'- gCGUUU---CGUUG-UUGA------UGCCGUaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 7755 0.68 0.980882
Target:  5'- gCGCGAAccGCGGCGGCgGCGGCGUcgaggaGCUg -3'
miRNA:   3'- -GCGUUU--CGUUGUUGaUGCCGUA------CGGg -5'
8064 5' -50.2 NC_001973.1 + 7919 0.67 0.990988
Target:  5'- uGCGAGGCGgagcGCGugUgcGCGGCcgGCg- -3'
miRNA:   3'- gCGUUUCGU----UGUugA--UGCCGuaCGgg -5'
8064 5' -50.2 NC_001973.1 + 10184 0.66 0.996317
Target:  5'- cCGCAcgAAGCcgucGCGGC-ACGGC--GCCCu -3'
miRNA:   3'- -GCGU--UUCGu---UGUUGaUGCCGuaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 10595 0.66 0.996317
Target:  5'- gGCAAAGUAuuGGCaguUGGCGagGCCCu -3'
miRNA:   3'- gCGUUUCGUugUUGau-GCCGUa-CGGG- -5'
8064 5' -50.2 NC_001973.1 + 16680 0.69 0.976107
Target:  5'- gCGCGcAAGCGucGCAGCU-CGaCAUGUCCa -3'
miRNA:   3'- -GCGU-UUCGU--UGUUGAuGCcGUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 16926 0.67 0.991469
Target:  5'- gGCGgcGCAGCAAaaagaagggcguuucCgcgaaGCGGcCGUGCCCg -3'
miRNA:   3'- gCGUuuCGUUGUU---------------Ga----UGCC-GUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 17420 0.76 0.704536
Target:  5'- uCGCGAAGCAgugagcgaACAGCUcguugccgccgaacgGCGGCAUGCaCUc -3'
miRNA:   3'- -GCGUUUCGU--------UGUUGA---------------UGCCGUACG-GG- -5'
8064 5' -50.2 NC_001973.1 + 17821 0.69 0.970512
Target:  5'- uCGUuGAGCGACGcgccguCgaggGUGGCGUGCCCg -3'
miRNA:   3'- -GCGuUUCGUUGUu-----Ga---UGCCGUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 20417 0.66 0.995678
Target:  5'- uGCAcAGCGuuCAugcCUugGGCuAUGUCCg -3'
miRNA:   3'- gCGUuUCGUu-GUu--GAugCCG-UACGGG- -5'
8064 5' -50.2 NC_001973.1 + 21491 0.66 0.99495
Target:  5'- gCGCGucGCGGCccgccGACU-CGaGguUGCCCa -3'
miRNA:   3'- -GCGUuuCGUUG-----UUGAuGC-CguACGGG- -5'
8064 5' -50.2 NC_001973.1 + 22065 0.68 0.980882
Target:  5'- gGacuGGGCGGCGugUGCGGaGUGCgCCg -3'
miRNA:   3'- gCgu-UUCGUUGUugAUGCCgUACG-GG- -5'
8064 5' -50.2 NC_001973.1 + 24564 0.69 0.964035
Target:  5'- aGUuccuGGGCAACGcguucgcccaguACUgggGCGGCAUGCaCCg -3'
miRNA:   3'- gCGu---UUCGUUGU------------UGA---UGCCGUACG-GG- -5'
8064 5' -50.2 NC_001973.1 + 28106 0.66 0.996317
Target:  5'- gGCGGAGCGACGACUGaacGCGauCCUc -3'
miRNA:   3'- gCGUUUCGUUGUUGAUgc-CGUacGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.