miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8065 3' -55.6 NC_001973.1 + 87434 0.66 0.917359
Target:  5'- cGCGUCGAU-AGCCauggggaugGGCCCGAcggCGCg -3'
miRNA:   3'- -UGUAGCUGcUCGG---------CCGGGUUua-GCGg -5'
8065 3' -55.6 NC_001973.1 + 121787 0.66 0.917359
Target:  5'- cACGUCGACG-GUUcGCCUGGAggGCCg -3'
miRNA:   3'- -UGUAGCUGCuCGGcCGGGUUUagCGG- -5'
8065 3' -55.6 NC_001973.1 + 3840 0.66 0.915641
Target:  5'- cGCcggCGAuuUGGGCCGGCUCGucgaugugcaugacGAUCGUCa -3'
miRNA:   3'- -UGua-GCU--GCUCGGCCGGGU--------------UUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 144360 0.67 0.91155
Target:  5'- gACGagGACGAGCCGccGCCgccgcCGCCg -3'
miRNA:   3'- -UGUagCUGCUCGGC--CGGguuuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 132394 0.67 0.91155
Target:  5'- -uGUCGACGcGUcagauccuccuCGGCCCGGAUCGa- -3'
miRNA:   3'- ugUAGCUGCuCG-----------GCCGGGUUUAGCgg -5'
8065 3' -55.6 NC_001973.1 + 40685 0.67 0.91155
Target:  5'- uCGUCGACGAGUgaaGGCCgAccgCGCg -3'
miRNA:   3'- uGUAGCUGCUCGg--CCGGgUuuaGCGg -5'
8065 3' -55.6 NC_001973.1 + 150075 0.67 0.907953
Target:  5'- -gGUCGAuuucaaaaaucaaguCGcGCCGGuCCCAGccuUCGCCu -3'
miRNA:   3'- ugUAGCU---------------GCuCGGCC-GGGUUu--AGCGG- -5'
8065 3' -55.6 NC_001973.1 + 139630 0.67 0.905508
Target:  5'- uCGUUGAUGgagaacgcgcAGCCGGaCCCGAc-CGCCg -3'
miRNA:   3'- uGUAGCUGC----------UCGGCC-GGGUUuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 78332 0.67 0.905508
Target:  5'- aACcgCu-CGAGCUGGCCCucgaccuGUaCGCCa -3'
miRNA:   3'- -UGuaGcuGCUCGGCCGGGuu-----UA-GCGG- -5'
8065 3' -55.6 NC_001973.1 + 14283 0.67 0.905508
Target:  5'- aACG-CGACGGuGCgCGGUCUAAaguAUUGCCa -3'
miRNA:   3'- -UGUaGCUGCU-CG-GCCGGGUU---UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 38630 0.67 0.905508
Target:  5'- -uGUCGGCGAcaCCGGCCguGcUCGCg -3'
miRNA:   3'- ugUAGCUGCUc-GGCCGGguUuAGCGg -5'
8065 3' -55.6 NC_001973.1 + 47797 0.67 0.905508
Target:  5'- ---cCGGcCGcGCCGGCcgacgcgugcgCCAAAUCGCCc -3'
miRNA:   3'- uguaGCU-GCuCGGCCG-----------GGUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 52707 0.67 0.905508
Target:  5'- -aAUCGuaguCGAGCCGccgcaGCUCGAG-CGCCa -3'
miRNA:   3'- ugUAGCu---GCUCGGC-----CGGGUUUaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 121822 0.67 0.905508
Target:  5'- -aAUCGACgGAGUacacgCGGCCCGAAccgguuUCgGCCg -3'
miRNA:   3'- ugUAGCUG-CUCG-----GCCGGGUUU------AG-CGG- -5'
8065 3' -55.6 NC_001973.1 + 131779 0.67 0.905508
Target:  5'- gACGaCGGCG-GCCGGCUCGgugaAGggGCCg -3'
miRNA:   3'- -UGUaGCUGCuCGGCCGGGU----UUagCGG- -5'
8065 3' -55.6 NC_001973.1 + 132450 0.67 0.905508
Target:  5'- gGCGcCGGCgGGGCgCGGCCUcgucGGGcUCGCCg -3'
miRNA:   3'- -UGUaGCUG-CUCG-GCCGGG----UUU-AGCGG- -5'
8065 3' -55.6 NC_001973.1 + 137887 0.67 0.905508
Target:  5'- cGCGUCGGCGA---GGCCCGAGU-GCa -3'
miRNA:   3'- -UGUAGCUGCUcggCCGGGUUUAgCGg -5'
8065 3' -55.6 NC_001973.1 + 90216 0.67 0.899234
Target:  5'- aGCGcUCGACGcGCacggacgccucgUGGCCCAAGUCGg- -3'
miRNA:   3'- -UGU-AGCUGCuCG------------GCCGGGUUUAGCgg -5'
8065 3' -55.6 NC_001973.1 + 81639 0.67 0.899234
Target:  5'- -gGUCGcGCGcgccgcuucGGCCGGCCCGcacagcuuguUCGCCc -3'
miRNA:   3'- ugUAGC-UGC---------UCGGCCGGGUuu--------AGCGG- -5'
8065 3' -55.6 NC_001973.1 + 57658 0.67 0.89536
Target:  5'- --uUCGuACGGGCCGcuaaauuuuagauacGCcaCCGGAUCGCCg -3'
miRNA:   3'- uguAGC-UGCUCGGC---------------CG--GGUUUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.