miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8065 3' -55.6 NC_001973.1 + 59288 0.85 0.128119
Target:  5'- aGCAUCGAccgguCGGGCCGGCCCGcgcgcUCGCCg -3'
miRNA:   3'- -UGUAGCU-----GCUCGGCCGGGUuu---AGCGG- -5'
8065 3' -55.6 NC_001973.1 + 33184 0.81 0.245104
Target:  5'- uCAUCGAcucgauuuCGAGCCuGUCCAGGUCGCCg -3'
miRNA:   3'- uGUAGCU--------GCUCGGcCGGGUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 112775 0.8 0.263223
Target:  5'- uCGUCGACGcucuccaCCGuGCCCAAGUCGCCg -3'
miRNA:   3'- uGUAGCUGCuc-----GGC-CGGGUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 109150 0.79 0.3027
Target:  5'- cGCcUCGACGAGCCGGgCgAGccgGUCGCCc -3'
miRNA:   3'- -UGuAGCUGCUCGGCCgGgUU---UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 21332 0.78 0.324087
Target:  5'- cGCA-CG-CGAGCCGgccGCCCGAGUUGCCg -3'
miRNA:   3'- -UGUaGCuGCUCGGC---CGGGUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 23475 0.77 0.37017
Target:  5'- uCcgCGAcCGAGUCGGCCCAAAcgaaCGCCg -3'
miRNA:   3'- uGuaGCU-GCUCGGCCGGGUUUa---GCGG- -5'
8065 3' -55.6 NC_001973.1 + 62701 0.77 0.37017
Target:  5'- gGCggCGACGAcGUCGcgaaaaacuuGCCCAAGUCGCCg -3'
miRNA:   3'- -UGuaGCUGCU-CGGC----------CGGGUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 109243 0.77 0.378273
Target:  5'- -gAUCaGCGAGCCGGCUCucauuuuGUCGCCu -3'
miRNA:   3'- ugUAGcUGCUCGGCCGGGuu-----UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 21492 0.76 0.420534
Target:  5'- cGCGUCG-CGGcccGCCGacucgagguuGCCCAGGUCGCCg -3'
miRNA:   3'- -UGUAGCuGCU---CGGC----------CGGGUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 87706 0.76 0.456322
Target:  5'- -gGUCGAUGAGCCGGUugugCCGcAUCGCg -3'
miRNA:   3'- ugUAGCUGCUCGGCCG----GGUuUAGCGg -5'
8065 3' -55.6 NC_001973.1 + 96942 0.76 0.456322
Target:  5'- gGCAUCGACGAGCCGuucgacgaCUGGcgCGCCg -3'
miRNA:   3'- -UGUAGCUGCUCGGCcg------GGUUuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 79951 0.76 0.456322
Target:  5'- gACGUCGACGAGCaCGuaCUGgaugcGAUCGCCg -3'
miRNA:   3'- -UGUAGCUGCUCG-GCcgGGU-----UUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 4661 0.75 0.465524
Target:  5'- cCGUCGGCGAGUCGGacaCCAcuAUCGCg -3'
miRNA:   3'- uGUAGCUGCUCGGCCg--GGUu-UAGCGg -5'
8065 3' -55.6 NC_001973.1 + 29730 0.74 0.522603
Target:  5'- uGCAaaaCGACGAGCCGGCCUucuUCgacgGCCu -3'
miRNA:   3'- -UGUa--GCUGCUCGGCCGGGuuuAG----CGG- -5'
8065 3' -55.6 NC_001973.1 + 94512 0.74 0.532388
Target:  5'- aGCAUCG-CGAccGCCGccccGCCCGGcgCGCCg -3'
miRNA:   3'- -UGUAGCuGCU--CGGC----CGGGUUuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 4966 0.74 0.551156
Target:  5'- gGCA-CGGCGAGCCGGUcgugcgaCCGAagguGUCGUCg -3'
miRNA:   3'- -UGUaGCUGCUCGGCCG-------GGUU----UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 97133 0.74 0.552149
Target:  5'- -gGUCGAgaaCGAaacGCCGGCUCGacuGAUCGCCa -3'
miRNA:   3'- ugUAGCU---GCU---CGGCCGGGU---UUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 55426 0.74 0.562114
Target:  5'- uCGUCGGCGgcGGCgGGCCCGacggcgcggcgGAUCGUCu -3'
miRNA:   3'- uGUAGCUGC--UCGgCCGGGU-----------UUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 25648 0.73 0.58218
Target:  5'- cGCGUCGACGcggagccgaAGCCGucGCCgAAgccGUCGCCg -3'
miRNA:   3'- -UGUAGCUGC---------UCGGC--CGGgUU---UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 69014 0.73 0.59227
Target:  5'- ----gGACGGGCC-GCCCGAcUCGCCc -3'
miRNA:   3'- uguagCUGCUCGGcCGGGUUuAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.