miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8065 3' -55.6 NC_001973.1 + 571 0.71 0.733071
Target:  5'- cCAgCGACGGGCaCGaGCCCGccacGAUCGUCc -3'
miRNA:   3'- uGUaGCUGCUCG-GC-CGGGU----UUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 3511 0.68 0.849146
Target:  5'- cACGUCGACGAcgaaGCCcGCcgCCAAccuGUCGCUg -3'
miRNA:   3'- -UGUAGCUGCU----CGGcCG--GGUU---UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 3840 0.66 0.915641
Target:  5'- cGCcggCGAuuUGGGCCGGCUCGucgaugugcaugacGAUCGUCa -3'
miRNA:   3'- -UGua-GCU--GCUCGGCCGGGU--------------UUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 4148 0.66 0.933375
Target:  5'- -aGUCGGCGAuuaaguacucgGUgGGUCCG--UCGCCg -3'
miRNA:   3'- ugUAGCUGCU-----------CGgCCGGGUuuAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 4331 0.66 0.922934
Target:  5'- cGCGcUCGACGAccucucGgCGGCCguGAUCGUa -3'
miRNA:   3'- -UGU-AGCUGCU------CgGCCGGguUUAGCGg -5'
8065 3' -55.6 NC_001973.1 + 4661 0.75 0.465524
Target:  5'- cCGUCGGCGAGUCGGacaCCAcuAUCGCg -3'
miRNA:   3'- uGUAGCUGCUCGGCCg--GGUu-UAGCGg -5'
8065 3' -55.6 NC_001973.1 + 4966 0.74 0.551156
Target:  5'- gGCA-CGGCGAGCCGGUcgugcgaCCGAagguGUCGUCg -3'
miRNA:   3'- -UGUaGCUGCUCGGCCG-------GGUU----UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 5745 0.66 0.926165
Target:  5'- ----gGACGGGCCgccgaagcGGCCCAcggcgcuacgcgcGUCGCCg -3'
miRNA:   3'- uguagCUGCUCGG--------CCGGGUu------------UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 6353 0.68 0.849146
Target:  5'- gGCGUCGAgGgGGCCGaGCCUugcgagucGAUCGCg -3'
miRNA:   3'- -UGUAGCUgC-UCGGC-CGGGu-------UUAGCGg -5'
8065 3' -55.6 NC_001973.1 + 6429 0.72 0.653158
Target:  5'- cGCGcCGACGAG-CGcGCCCG--UCGCCg -3'
miRNA:   3'- -UGUaGCUGCUCgGC-CGGGUuuAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 7775 0.7 0.742765
Target:  5'- gGCGUCGAgGAGCUGGCUaaCAAAaaguUUGCg -3'
miRNA:   3'- -UGUAGCUgCUCGGCCGG--GUUU----AGCGg -5'
8065 3' -55.6 NC_001973.1 + 8170 0.66 0.933375
Target:  5'- cCGUCGGCGGGUcgaCGGaCgAGcgCGCCg -3'
miRNA:   3'- uGUAGCUGCUCG---GCCgGgUUuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 8821 0.71 0.733071
Target:  5'- gACA-CGACGAGCCcGCCCGccgucccgCGCUg -3'
miRNA:   3'- -UGUaGCUGCUCGGcCGGGUuua-----GCGG- -5'
8065 3' -55.6 NC_001973.1 + 9599 0.69 0.807455
Target:  5'- cGCAUCGGC---CCGuGCCCGgagugaaacagcGAUCGCCg -3'
miRNA:   3'- -UGUAGCUGcucGGC-CGGGU------------UUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 10528 0.69 0.807455
Target:  5'- gGCAguagGAgGAGcCCGGCUCGAcgacgugcucGUCGCCg -3'
miRNA:   3'- -UGUag--CUgCUC-GGCCGGGUU----------UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 10805 0.66 0.938243
Target:  5'- gGCGcCGACG-G-CGGCgaGAAUCGCCa -3'
miRNA:   3'- -UGUaGCUGCuCgGCCGggUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 14283 0.67 0.905508
Target:  5'- aACG-CGACGGuGCgCGGUCUAAaguAUUGCCa -3'
miRNA:   3'- -UGUaGCUGCU-CG-GCCGGGUU---UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 14554 0.66 0.942877
Target:  5'- --uUCGACG-GCCGGCCgg---CGCa -3'
miRNA:   3'- uguAGCUGCuCGGCCGGguuuaGCGg -5'
8065 3' -55.6 NC_001973.1 + 18385 0.68 0.852283
Target:  5'- ---cCGGCGuuucGCCGGCCCucaucauucggcUCGCCa -3'
miRNA:   3'- uguaGCUGCu---CGGCCGGGuuu---------AGCGG- -5'
8065 3' -55.6 NC_001973.1 + 18533 0.7 0.7805
Target:  5'- gGCGUacggGGCGcGCCGGCCgCAuaggCGCCu -3'
miRNA:   3'- -UGUAg---CUGCuCGGCCGG-GUuua-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.