miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8066 3' -60.8 NC_001973.1 + 160789 0.68 0.639562
Target:  5'- -cGCCCaagcUCGAgCUCGGCgGGCGCGu -3'
miRNA:   3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 160690 0.66 0.771924
Target:  5'- -uGCCUuaacUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 160612 0.69 0.590966
Target:  5'- -uGCCCaaacUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 160517 0.7 0.509331
Target:  5'- cGAGCCCGAUgaGAUcacgccuaaacugagCUCGGCgGACGCGu -3'
miRNA:   3'- -CUUGGGCUAg-CUG---------------GGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 160440 0.66 0.748369
Target:  5'- aAACCCGAUgacaucaugccuaaaCuGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cUUGGGCUA---------------G-CUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 160360 0.7 0.537366
Target:  5'- cGAGCCCGaugagaucacgcccaAgcUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- -CUUGGGC---------------U--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 155946 0.69 0.562083
Target:  5'- -cACCCcGUCGGCCUCcGCCGAgGUGg -3'
miRNA:   3'- cuUGGGcUAGCUGGGGcCGGCUgCGC- -5'
8066 3' -60.8 NC_001973.1 + 155470 0.66 0.726068
Target:  5'- uGAGCCCGcucUCGAgCCCGgugaaucuaccGCCGAgGCc -3'
miRNA:   3'- -CUUGGGCu--AGCUgGGGC-----------CGGCUgCGc -5'
8066 3' -60.8 NC_001973.1 + 153543 0.66 0.771924
Target:  5'- aGAgCCGAgccgCGACCCCcaaCCGAUGCu -3'
miRNA:   3'- cUUgGGCUa---GCUGGGGcc-GGCUGCGc -5'
8066 3' -60.8 NC_001973.1 + 152376 0.67 0.668708
Target:  5'- cGAGCCgGA-CGGCCggcgCgGGCgGGCGCGg -3'
miRNA:   3'- -CUUGGgCUaGCUGG----GgCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 151183 0.69 0.556349
Target:  5'- -uGCCCGGUCaGagccgaugacaucauGCCUCGGCCGGCGg- -3'
miRNA:   3'- cuUGGGCUAG-C---------------UGGGGCCGGCUGCgc -5'
8066 3' -60.8 NC_001973.1 + 150881 0.73 0.361888
Target:  5'- gGAGCCgGGgcgcguuccaCGAgCUCGGCCGACGCGu -3'
miRNA:   3'- -CUUGGgCUa---------GCUgGGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 150284 0.67 0.716646
Target:  5'- --cUCUuGUCGGCCCgGGCCGcCGCu -3'
miRNA:   3'- cuuGGGcUAGCUGGGgCCGGCuGCGc -5'
8066 3' -60.8 NC_001973.1 + 150198 0.66 0.753865
Target:  5'- uGGGCCgCGGcUCGGCCUCGGCUuGCuggGCGg -3'
miRNA:   3'- -CUUGG-GCU-AGCUGGGGCCGGcUG---CGC- -5'
8066 3' -60.8 NC_001973.1 + 150027 0.73 0.36953
Target:  5'- --uCCCGAuucUCGuCCCCgGGCCgGGCGCGg -3'
miRNA:   3'- cuuGGGCU---AGCuGGGG-CCGG-CUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 143835 0.69 0.590966
Target:  5'- cGAACagguUGAUCGAa-UUGGCCGACGCGg -3'
miRNA:   3'- -CUUGg---GCUAGCUggGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 143154 0.73 0.385142
Target:  5'- -uGCCCGcAUCGACgCCGGgCGGCuGCGu -3'
miRNA:   3'- cuUGGGC-UAGCUGgGGCCgGCUG-CGC- -5'
8066 3' -60.8 NC_001973.1 + 142411 0.66 0.762947
Target:  5'- aGAGCCggcagaCGAUCGugCCCGgcgaGCCGAuCGUc -3'
miRNA:   3'- -CUUGG------GCUAGCugGGGC----CGGCU-GCGc -5'
8066 3' -60.8 NC_001973.1 + 139812 0.7 0.512108
Target:  5'- -uGCCCGAUCGAgCCgccguugcgauucaCGGaCGACGCGc -3'
miRNA:   3'- cuUGGGCUAGCUgGG--------------GCCgGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 133268 0.74 0.32535
Target:  5'- cAGCUCGGccUCGGCCgCGGCCGAgaaCGCGg -3'
miRNA:   3'- cUUGGGCU--AGCUGGgGCCGGCU---GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.