miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8066 5' -52 NC_001973.1 + 113492 0.71 0.869498
Target:  5'- uUGCGCG-CCGCCaGGUUCGug-UAGGc -3'
miRNA:   3'- -AUGCGCaGGCGGcUCGAGUuaaAUCC- -5'
8066 5' -52 NC_001973.1 + 7103 0.71 0.869498
Target:  5'- cGCGCGaCCGCCGucguGCUCGAgugcGGc -3'
miRNA:   3'- aUGCGCaGGCGGCu---CGAGUUaaauCC- -5'
8066 5' -52 NC_001973.1 + 145301 0.71 0.861816
Target:  5'- gGCGCGggcaCCGCCGAGCUgGu----GGa -3'
miRNA:   3'- aUGCGCa---GGCGGCUCGAgUuaaauCC- -5'
8066 5' -52 NC_001973.1 + 5434 0.71 0.861816
Target:  5'- -uCGCGUCCaaggaGCCGAGCUCGGg----- -3'
miRNA:   3'- auGCGCAGG-----CGGCUCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 71761 0.72 0.828984
Target:  5'- cGCGcCGggccccgCCGCCGAGCUCGAggccGGc -3'
miRNA:   3'- aUGC-GCa------GGCGGCUCGAGUUaaauCC- -5'
8066 5' -52 NC_001973.1 + 118421 0.72 0.81141
Target:  5'- gACGCuggCCGCCGGGCUCGAc----- -3'
miRNA:   3'- aUGCGca-GGCGGCUCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 21277 0.73 0.783793
Target:  5'- cGCgGCGUCCGCCGGgccgucGCUCAGUcgucGGGc -3'
miRNA:   3'- aUG-CGCAGGCGGCU------CGAGUUAaa--UCC- -5'
8066 5' -52 NC_001973.1 + 80788 0.74 0.754892
Target:  5'- gACGCGcauUUCGCUGAGCgucuucaaCAGUUUGGGg -3'
miRNA:   3'- aUGCGC---AGGCGGCUCGa-------GUUAAAUCC- -5'
8066 5' -52 NC_001973.1 + 150982 0.74 0.745018
Target:  5'- cUACGCGUCgGCCGGGgUCGuuaaAGGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUuaaaUCC- -5'
8066 5' -52 NC_001973.1 + 4861 0.74 0.73504
Target:  5'- gGCGCGacguuUCCGCCGuGCUCGuacaAGGg -3'
miRNA:   3'- aUGCGC-----AGGCGGCuCGAGUuaaaUCC- -5'
8066 5' -52 NC_001973.1 + 12512 0.74 0.724969
Target:  5'- uUACGCGUCgGCCG-GCUCAAa----- -3'
miRNA:   3'- -AUGCGCAGgCGGCuCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 151091 0.75 0.652668
Target:  5'- cUACGCGcCCGCCGGGgUCGuuugAGGu -3'
miRNA:   3'- -AUGCGCaGGCGGCUCgAGUuaaaUCC- -5'
8066 5' -52 NC_001973.1 + 151376 0.76 0.621236
Target:  5'- uUACGCGUCgGCCGGGgUCGucugAGGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUuaaaUCC- -5'
8066 5' -52 NC_001973.1 + 12450 0.76 0.600311
Target:  5'- uUACGCGUCgGCCGGGgUCGAUcgAGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 130565 0.76 0.600311
Target:  5'- uUACGCGUCgGCCGGGgUCGAUcgAGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 130800 0.76 0.600311
Target:  5'- uUACGCGUCgGCCGGGgUCGAUcgAGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 21184 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCGAUc-GGGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCC- -5'
8066 5' -52 NC_001973.1 + 21086 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCAAUcgAGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 2825 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCGAUc-GGGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCC- -5'
8066 5' -52 NC_001973.1 + 2707 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCGAUc-GGGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.