miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8066 5' -52 NC_001973.1 + 41022 1.1 0.006613
Target:  5'- uUACGCGUCCGCCGAGCUCAGUUUGGGg -3'
miRNA:   3'- -AUGCGCAGGCGGCUCGAGUUAAAUCC- -5'
8066 5' -52 NC_001973.1 + 40943 1.01 0.023628
Target:  5'- cUACGCGUCCGCCGAGCUCgAGUUUAGGc -3'
miRNA:   3'- -AUGCGCAGGCGGCUCGAG-UUAAAUCC- -5'
8066 5' -52 NC_001973.1 + 40865 1.01 0.023628
Target:  5'- cUACGCGUCCGCCGAGCUCgAGUUUAGGc -3'
miRNA:   3'- -AUGCGCAGGCGGCUCGAG-UUAAAUCC- -5'
8066 5' -52 NC_001973.1 + 114991 1.01 0.024996
Target:  5'- uUACGCGUCCGCCGAGCUCgAGUUUGGGc -3'
miRNA:   3'- -AUGCGCAGGCGGCUCGAG-UUAAAUCC- -5'
8066 5' -52 NC_001973.1 + 114835 1 0.025709
Target:  5'- cUACGCGUCCGCCGAGCUCgAGUUUGGGc -3'
miRNA:   3'- -AUGCGCAGGCGGCUCGAG-UUAAAUCC- -5'
8066 5' -52 NC_001973.1 + 114603 0.95 0.056194
Target:  5'- uUACGCGUCCGCCGAGCUCAAguuaAGGc -3'
miRNA:   3'- -AUGCGCAGGCGGCUCGAGUUaaa-UCC- -5'
8066 5' -52 NC_001973.1 + 41101 0.95 0.056194
Target:  5'- cUACGCGUCCGCCGAGCUCgAGUUUGGu -3'
miRNA:   3'- -AUGCGCAGGCGGCUCGAG-UUAAAUCc -5'
8066 5' -52 NC_001973.1 + 114759 0.95 0.05777
Target:  5'- uUACGCGUCCG-CGAGCUCAGUUUAGGc -3'
miRNA:   3'- -AUGCGCAGGCgGCUCGAGUUAAAUCC- -5'
8066 5' -52 NC_001973.1 + 114681 0.92 0.082572
Target:  5'- cUACGCGcCCGCCGAGCUCgAGUUUGGGc -3'
miRNA:   3'- -AUGCGCaGGCGGCUCGAG-UUAAAUCC- -5'
8066 5' -52 NC_001973.1 + 114913 0.89 0.137641
Target:  5'- uUACGCGUCCaCCGAGCUCgAGUUUGGGc -3'
miRNA:   3'- -AUGCGCAGGcGGCUCGAG-UUAAAUCC- -5'
8066 5' -52 NC_001973.1 + 150924 0.84 0.27355
Target:  5'- cUACGCGUCCGCCGGGgUCGuuggAGGu -3'
miRNA:   3'- -AUGCGCAGGCGGCUCgAGUuaaaUCC- -5'
8066 5' -52 NC_001973.1 + 115052 0.82 0.315567
Target:  5'- --gGCGUCCGCCGAGCUCGAg----- -3'
miRNA:   3'- augCGCAGGCGGCUCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 12137 0.8 0.395982
Target:  5'- uUACGCGUCUGCCGGGgUCAAUcgAGu -3'
miRNA:   3'- -AUGCGCAGGCGGCUCgAGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 146012 0.78 0.528227
Target:  5'- aGCGgGUCCGCCG-GCUCGAgcgcGGGu -3'
miRNA:   3'- aUGCgCAGGCGGCuCGAGUUaaa-UCC- -5'
8066 5' -52 NC_001973.1 + 21086 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCAAUcgAGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 2825 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCGAUc-GGGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCC- -5'
8066 5' -52 NC_001973.1 + 2707 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCGAUc-GGGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCC- -5'
8066 5' -52 NC_001973.1 + 21184 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCGAUc-GGGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCC- -5'
8066 5' -52 NC_001973.1 + 130800 0.76 0.600311
Target:  5'- uUACGCGUCgGCCGGGgUCGAUcgAGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 12450 0.76 0.600311
Target:  5'- uUACGCGUCgGCCGGGgUCGAUcgAGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.