miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8066 5' -52 NC_001973.1 + 1806 0.66 0.987658
Target:  5'- aACGCGUacugguccCCGCCGAGCgcgCAcacggccAGGc -3'
miRNA:   3'- aUGCGCA--------GGCGGCUCGa--GUuaaa---UCC- -5'
8066 5' -52 NC_001973.1 + 2707 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCGAUc-GGGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCC- -5'
8066 5' -52 NC_001973.1 + 2825 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCGAUc-GGGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCC- -5'
8066 5' -52 NC_001973.1 + 3810 0.68 0.967927
Target:  5'- aGCGCGagCCGUCGAacaGCUCcaccggcucgccggcGAUUUGGGc -3'
miRNA:   3'- aUGCGCa-GGCGGCU---CGAG---------------UUAAAUCC- -5'
8066 5' -52 NC_001973.1 + 4224 0.67 0.980187
Target:  5'- gGCGCGcCUGCCGGcGCUCG-UUUGc- -3'
miRNA:   3'- aUGCGCaGGCGGCU-CGAGUuAAAUcc -5'
8066 5' -52 NC_001973.1 + 4861 0.74 0.73504
Target:  5'- gGCGCGacguuUCCGCCGuGCUCGuacaAGGg -3'
miRNA:   3'- aUGCGC-----AGGCGGCuCGAGUuaaaUCC- -5'
8066 5' -52 NC_001973.1 + 4894 0.68 0.95974
Target:  5'- aGCGCGUaCGCCGGGUUCGu------ -3'
miRNA:   3'- aUGCGCAgGCGGCUCGAGUuaaaucc -5'
8066 5' -52 NC_001973.1 + 5434 0.71 0.861816
Target:  5'- -uCGCGUCCaaggaGCCGAGCUCGGg----- -3'
miRNA:   3'- auGCGCAGG-----CGGCUCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 7103 0.71 0.869498
Target:  5'- cGCGCGaCCGCCGucguGCUCGAgugcGGc -3'
miRNA:   3'- aUGCGCaGGCGGCu---CGAGUUaaauCC- -5'
8066 5' -52 NC_001973.1 + 12137 0.8 0.395982
Target:  5'- uUACGCGUCUGCCGGGgUCAAUcgAGu -3'
miRNA:   3'- -AUGCGCAGGCGGCUCgAGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 12450 0.76 0.600311
Target:  5'- uUACGCGUCgGCCGGGgUCGAUcgAGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 12512 0.74 0.724969
Target:  5'- uUACGCGUCgGCCG-GCUCAAa----- -3'
miRNA:   3'- -AUGCGCAGgCGGCuCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 19713 0.71 0.884187
Target:  5'- cUACGCGUCgGCCGgAGCUCuag--AGu -3'
miRNA:   3'- -AUGCGCAGgCGGC-UCGAGuuaaaUCc -5'
8066 5' -52 NC_001973.1 + 20066 0.66 0.987658
Target:  5'- aACGCGUacugguccCCGCCGAGCgagCAcacggccAGGc -3'
miRNA:   3'- aUGCGCA--------GGCGGCUCGa--GUuaaa---UCC- -5'
8066 5' -52 NC_001973.1 + 21086 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCAAUcgAGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 21184 0.77 0.569127
Target:  5'- uUACGCGUCgGCCGGGgUCGAUc-GGGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgAGUUAaaUCC- -5'
8066 5' -52 NC_001973.1 + 21277 0.73 0.783793
Target:  5'- cGCgGCGUCCGCCGGgccgucGCUCAGUcgucGGGc -3'
miRNA:   3'- aUG-CGCAGGCGGCU------CGAGUUAaa--UCC- -5'
8066 5' -52 NC_001973.1 + 23204 0.66 0.984257
Target:  5'- cGCGCG-CCGaCGAGCgcgCAGUggcgcAGGg -3'
miRNA:   3'- aUGCGCaGGCgGCUCGa--GUUAaa---UCC- -5'
8066 5' -52 NC_001973.1 + 23709 0.7 0.891182
Target:  5'- cUGCGCGccaagCCGCUGGGCUCGcugacGGGc -3'
miRNA:   3'- -AUGCGCa----GGCGGCUCGAGUuaaa-UCC- -5'
8066 5' -52 NC_001973.1 + 23820 0.69 0.928036
Target:  5'- gACGCGgcccUCGCCGAGUUCAAg----- -3'
miRNA:   3'- aUGCGCa---GGCGGCUCGAGUUaaaucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.