Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 62577 | 0.66 | 0.836188 |
Target: 5'- gGGCuCGAGCGGGcgcaGCGACgcgUCGCUCgagCg -3' miRNA: 3'- -CCG-GUUCGUCC----CGCUG---GGCGAGauaG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 10161 | 0.66 | 0.836188 |
Target: 5'- uGGUCGAGCGccGGGUggucGACCCGCa----- -3' miRNA: 3'- -CCGGUUCGU--CCCG----CUGGGCGagauag -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 103970 | 0.66 | 0.836188 |
Target: 5'- aGCCuAGcCGGGGCGugCCGUUg---- -3' miRNA: 3'- cCGGuUC-GUCCCGCugGGCGAgauag -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 95401 | 0.66 | 0.836188 |
Target: 5'- gGGC--GGCAaGGGCGccaACCCGCUgCUGg- -3' miRNA: 3'- -CCGguUCGU-CCCGC---UGGGCGA-GAUag -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 113563 | 0.66 | 0.827958 |
Target: 5'- cGCCAucAGCAGGGCGcuuuugccgguGCCgGCgCUGc- -3' miRNA: 3'- cCGGU--UCGUCCCGC-----------UGGgCGaGAUag -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 7268 | 0.66 | 0.810986 |
Target: 5'- gGGCUcGGCGcGcGGCGcGCCCGCUaccggGUCa -3' miRNA: 3'- -CCGGuUCGU-C-CCGC-UGGGCGAga---UAG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 61103 | 0.66 | 0.81012 |
Target: 5'- cGGCCGacggagcagcggcGGCGGGGCGcgGCgUCGCUCc-UCg -3' miRNA: 3'- -CCGGU-------------UCGUCCCGC--UG-GGCGAGauAG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 56532 | 0.67 | 0.784361 |
Target: 5'- aGCuCGGGCGGGGCGggcucggcGCCgaGCUCgaUAUCg -3' miRNA: 3'- cCG-GUUCGUCCCGC--------UGGg-CGAG--AUAG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 105894 | 0.67 | 0.756537 |
Target: 5'- cGCCGAGCu-GGCGcucGCCCGC-CUcGUCg -3' miRNA: 3'- cCGGUUCGucCCGC---UGGGCGaGA-UAG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 53053 | 0.68 | 0.737438 |
Target: 5'- uGGCUuuggAAGaAGGGCG-CCCGC-CUGUUg -3' miRNA: 3'- -CCGG----UUCgUCCCGCuGGGCGaGAUAG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 27866 | 0.68 | 0.737438 |
Target: 5'- cGGCCGcggccGCGGGcGCGGgCgCGCUCUcgCc -3' miRNA: 3'- -CCGGUu----CGUCC-CGCUgG-GCGAGAuaG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 54977 | 0.68 | 0.717981 |
Target: 5'- aGGCCGgaggcGGCGGcGGCGGCauuuCGCUCa--- -3' miRNA: 3'- -CCGGU-----UCGUC-CCGCUGg---GCGAGauag -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 137778 | 0.68 | 0.697244 |
Target: 5'- cGGCCAgcaGGUGGGGC-ACCaUGCUCUcguugcaGUCg -3' miRNA: 3'- -CCGGU---UCGUCCCGcUGG-GCGAGA-------UAG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 120370 | 0.69 | 0.677275 |
Target: 5'- cGGCCAagacggcgaguuuGGCGGGGCGAugUCCGC-Cg--- -3' miRNA: 3'- -CCGGU-------------UCGUCCCGCU--GGGCGaGauag -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 138362 | 0.69 | 0.667233 |
Target: 5'- cGGCCGagcgugccgaagGGCAGGGCcucgcccGACCCGUccaccaucaCUAUCu -3' miRNA: 3'- -CCGGU------------UCGUCCCG-------CUGGGCGa--------GAUAG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 95729 | 0.69 | 0.627876 |
Target: 5'- cGGCUGuuggcGCAGGGCGcGCCCGC-CgacaagAUCg -3' miRNA: 3'- -CCGGUu----CGUCCCGC-UGGGCGaGa-----UAG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 100798 | 0.7 | 0.616764 |
Target: 5'- uGGCC-AGCGGGcGCGAaUCGCUCUuguagcaaauuuuGUCg -3' miRNA: 3'- -CCGGuUCGUCC-CGCUgGGCGAGA-------------UAG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 107000 | 0.7 | 0.586557 |
Target: 5'- uGGaCAAGCuGGGCGACUaucugaaCGgUCUGUCg -3' miRNA: 3'- -CCgGUUCGuCCCGCUGG-------GCgAGAUAG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 63637 | 0.7 | 0.576543 |
Target: 5'- cGGCCGcGUGGGGCGGCgcgccggCCGC-CUGUUu -3' miRNA: 3'- -CCGGUuCGUCCCGCUG-------GGCGaGAUAG- -5' |
|||||||
8067 | 5' | -58.2 | NC_001973.1 | + | 120417 | 0.7 | 0.567564 |
Target: 5'- aGGCCccAGCuGGGCGACgUGCUCc--- -3' miRNA: 3'- -CCGGu-UCGuCCCGCUGgGCGAGauag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home