miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8068 3' -51.6 NC_001973.1 + 35441 0.67 0.969852
Target:  5'- ---cGCGCGGuCGUCGACgAGGCGGc- -3'
miRNA:   3'- uaaaCGUGCU-GCGGUUGgUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 104023 0.67 0.969852
Target:  5'- ----uCGCGGCGCCAgcaaccuaGCCGGGCcGUCg -3'
miRNA:   3'- uaaacGUGCUGCGGU--------UGGUCUGcUAG- -5'
8068 3' -51.6 NC_001973.1 + 122665 0.67 0.969852
Target:  5'- ----aCGCGGCGCCGucggGCCAGaacgcgcgGCGAUCc -3'
miRNA:   3'- uaaacGUGCUGCGGU----UGGUC--------UGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 110794 0.68 0.967982
Target:  5'- ---gGCACGGCgacgacgacgacgagGCCGcGCCGGACGAg- -3'
miRNA:   3'- uaaaCGUGCUG---------------CGGU-UGGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 124809 0.68 0.96669
Target:  5'- ---gGC-CGGgGCCucGAUCGGACGGUCg -3'
miRNA:   3'- uaaaCGuGCUgCGG--UUGGUCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 42469 0.68 0.96669
Target:  5'- ---cGC-CGACGCCGACgCcGACGAc- -3'
miRNA:   3'- uaaaCGuGCUGCGGUUG-GuCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 45682 0.68 0.96669
Target:  5'- ---cGCGCGuggGCGCCGugCAG-CGGUUu -3'
miRNA:   3'- uaaaCGUGC---UGCGGUugGUCuGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 105886 0.68 0.96669
Target:  5'- ---gGCgACGACGCCGAgCuGGCGcUCg -3'
miRNA:   3'- uaaaCG-UGCUGCGGUUgGuCUGCuAG- -5'
8068 3' -51.6 NC_001973.1 + 58977 0.68 0.96669
Target:  5'- -cUUGgACGGCGCCGagcacaagaucGCgCAGGCGAg- -3'
miRNA:   3'- uaAACgUGCUGCGGU-----------UG-GUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 130787 0.68 0.963302
Target:  5'- ---gGCGCGuaggauuuuacGCGUCGGCCGGGguCGAUCg -3'
miRNA:   3'- uaaaCGUGC-----------UGCGGUUGGUCU--GCUAG- -5'
8068 3' -51.6 NC_001973.1 + 12057 0.68 0.963302
Target:  5'- ---cGCGCGA-GCCGaucgacguuGCCGGACGAc- -3'
miRNA:   3'- uaaaCGUGCUgCGGU---------UGGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 157437 0.68 0.95968
Target:  5'- -cUUGCAgGGCGUCuaugAGCUgguAGGCGAUCa -3'
miRNA:   3'- uaAACGUgCUGCGG----UUGG---UCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 5946 0.68 0.95968
Target:  5'- --aUGCGCGACGC-GGCCGG-CGGa- -3'
miRNA:   3'- uaaACGUGCUGCGgUUGGUCuGCUag -5'
8068 3' -51.6 NC_001973.1 + 35173 0.68 0.95582
Target:  5'- ---gGCGCGACGCagCGACCucgucgccGCGAUCa -3'
miRNA:   3'- uaaaCGUGCUGCG--GUUGGuc------UGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 39553 0.68 0.95582
Target:  5'- -aUUGCACGccCGCCuGCguGACGAa- -3'
miRNA:   3'- uaAACGUGCu-GCGGuUGguCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 34307 0.68 0.951715
Target:  5'- cGUUUGCgccGCGGCGCCAACgGGuccuUGGUg -3'
miRNA:   3'- -UAAACG---UGCUGCGGUUGgUCu---GCUAg -5'
8068 3' -51.6 NC_001973.1 + 23489 0.68 0.951715
Target:  5'- ---gGCccaaACGaACGCCGcccucaACCAGAUGAUCg -3'
miRNA:   3'- uaaaCG----UGC-UGCGGU------UGGUCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 132960 0.68 0.951715
Target:  5'- ---aGCACGAUGCCcACCacggAGGCGGc- -3'
miRNA:   3'- uaaaCGUGCUGCGGuUGG----UCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 122616 0.68 0.951715
Target:  5'- ---cGUcgGCGGCGCCGACgCGGGCGccggcGUCg -3'
miRNA:   3'- uaaaCG--UGCUGCGGUUG-GUCUGC-----UAG- -5'
8068 3' -51.6 NC_001973.1 + 3196 0.68 0.951715
Target:  5'- ---cGCGCu-CGCCAGCuCGGGCuGAUCg -3'
miRNA:   3'- uaaaCGUGcuGCGGUUG-GUCUG-CUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.