miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8068 3' -51.6 NC_001973.1 + 133338 0.76 0.593693
Target:  5'- ---cGCGCGACGCCGACCGucGCGAa- -3'
miRNA:   3'- uaaaCGUGCUGCGGUUGGUc-UGCUag -5'
8068 3' -51.6 NC_001973.1 + 135897 0.75 0.646762
Target:  5'- ---aGCgGCGGuCGCgGGCCGGACGAUCg -3'
miRNA:   3'- uaaaCG-UGCU-GCGgUUGGUCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 62959 0.75 0.689041
Target:  5'- -cUUGCGCGA-GCCcGCCGG-CGAUCa -3'
miRNA:   3'- uaAACGUGCUgCGGuUGGUCuGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 17628 0.74 0.730502
Target:  5'- cGUUUGCACGACGCcCAACCGuuucUGAUUg -3'
miRNA:   3'- -UAAACGUGCUGCG-GUUGGUcu--GCUAG- -5'
8068 3' -51.6 NC_001973.1 + 138626 0.74 0.730502
Target:  5'- --cUGCACGgcuGCGCCAGCgCGGGCGGc- -3'
miRNA:   3'- uaaACGUGC---UGCGGUUG-GUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 119229 0.74 0.750722
Target:  5'- ---aGguCGACGCCGAgCAGGCGAa- -3'
miRNA:   3'- uaaaCguGCUGCGGUUgGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 104266 0.74 0.750722
Target:  5'- ---gGCgGCGGCGCCGccGCCGGGCuGGUCg -3'
miRNA:   3'- uaaaCG-UGCUGCGGU--UGGUCUG-CUAG- -5'
8068 3' -51.6 NC_001973.1 + 43616 0.72 0.843473
Target:  5'- --gUGCuuGGCGCCGACCAGcuCGAg- -3'
miRNA:   3'- uaaACGugCUGCGGUUGGUCu-GCUag -5'
8068 3' -51.6 NC_001973.1 + 100112 0.71 0.859822
Target:  5'- ---cGCucGCGACGUUGACCAGucCGAUCa -3'
miRNA:   3'- uaaaCG--UGCUGCGGUUGGUCu-GCUAG- -5'
8068 3' -51.6 NC_001973.1 + 115102 0.71 0.859822
Target:  5'- ---gGCGCGAUGUCugAGCCGGGCgGAUCc -3'
miRNA:   3'- uaaaCGUGCUGCGG--UUGGUCUG-CUAG- -5'
8068 3' -51.6 NC_001973.1 + 120953 0.71 0.867667
Target:  5'- --cUGCACGGCgGCCAGCgCGG-CGGUUu -3'
miRNA:   3'- uaaACGUGCUG-CGGUUG-GUCuGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 100387 0.71 0.867667
Target:  5'- ---cGCGCGuCGCCGcccACCAcACGAUCu -3'
miRNA:   3'- uaaaCGUGCuGCGGU---UGGUcUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 5981 0.71 0.875284
Target:  5'- -cUUGCACGcgGCGCggucgcguuuCGACCGGACGAg- -3'
miRNA:   3'- uaAACGUGC--UGCG----------GUUGGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 76941 0.71 0.875284
Target:  5'- ---aGUACGugGCCGACCuggccaccaAGGCGggCa -3'
miRNA:   3'- uaaaCGUGCugCGGUUGG---------UCUGCuaG- -5'
8068 3' -51.6 NC_001973.1 + 4936 0.71 0.882666
Target:  5'- ---gGCuCGuCGCCGACCGGcCGGUCc -3'
miRNA:   3'- uaaaCGuGCuGCGGUUGGUCuGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 103984 0.7 0.889809
Target:  5'- --gUGCcguuGCGACGCCAgcagccuaGCCGGGCcGUCg -3'
miRNA:   3'- uaaACG----UGCUGCGGU--------UGGUCUGcUAG- -5'
8068 3' -51.6 NC_001973.1 + 152364 0.7 0.896708
Target:  5'- ---cGCGCGAaugaGCgAGCCGGACGGc- -3'
miRNA:   3'- uaaaCGUGCUg---CGgUUGGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 69682 0.7 0.909755
Target:  5'- ---gGCGCGGuCG-CGugCAGACGGUCg -3'
miRNA:   3'- uaaaCGUGCU-GCgGUugGUCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 160810 0.69 0.921786
Target:  5'- ---gGCGCGuaggauuuuacGCGUCGGCCGGAguCGAUCa -3'
miRNA:   3'- uaaaCGUGC-----------UGCGGUUGGUCU--GCUAG- -5'
8068 3' -51.6 NC_001973.1 + 108449 0.69 0.921786
Target:  5'- ---cGCGCGACGCCcgcACCguguggcuggAGAgGAUCa -3'
miRNA:   3'- uaaaCGUGCUGCGGu--UGG----------UCUgCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.