miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8068 3' -51.6 NC_001973.1 + 3196 0.68 0.951715
Target:  5'- ---cGCGCu-CGCCAGCuCGGGCuGAUCg -3'
miRNA:   3'- uaaaCGUGcuGCGGUUG-GUCUG-CUAG- -5'
8068 3' -51.6 NC_001973.1 + 4936 0.71 0.882666
Target:  5'- ---gGCuCGuCGCCGACCGGcCGGUCc -3'
miRNA:   3'- uaaaCGuGCuGCGGUUGGUCuGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 5718 0.69 0.937901
Target:  5'- ---aGCGCGuCGCCccgcugggugguGACCGGACGGg- -3'
miRNA:   3'- uaaaCGUGCuGCGG------------UUGGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 5899 0.69 0.934863
Target:  5'- ---cGCGCGACGCgAACgAGauccucgcgucgcccGCGGUCg -3'
miRNA:   3'- uaaaCGUGCUGCGgUUGgUC---------------UGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 5946 0.68 0.95968
Target:  5'- --aUGCGCGACGC-GGCCGG-CGGa- -3'
miRNA:   3'- uaaACGUGCUGCGgUUGGUCuGCUag -5'
8068 3' -51.6 NC_001973.1 + 5981 0.71 0.875284
Target:  5'- -cUUGCACGcgGCGCggucgcguuuCGACCGGACGAg- -3'
miRNA:   3'- uaAACGUGC--UGCG----------GUUGGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 7749 0.66 0.984461
Target:  5'- ---gGUGCGGCGCgAACCGcGGCGGc- -3'
miRNA:   3'- uaaaCGUGCUGCGgUUGGU-CUGCUag -5'
8068 3' -51.6 NC_001973.1 + 8524 0.66 0.984461
Target:  5'- -aUUGCGCGACGCuCGGCUccaagAGACu--- -3'
miRNA:   3'- uaAACGUGCUGCG-GUUGG-----UCUGcuag -5'
8068 3' -51.6 NC_001973.1 + 11024 0.66 0.989342
Target:  5'- ---gGCGCuGCGUCAGCgAG-CGGUCg -3'
miRNA:   3'- uaaaCGUGcUGCGGUUGgUCuGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 12057 0.68 0.963302
Target:  5'- ---cGCGCGA-GCCGaucgacguuGCCGGACGAc- -3'
miRNA:   3'- uaaaCGUGCUgCGGU---------UGGUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 13700 0.66 0.989342
Target:  5'- ---cGCACcaGCGaUCGAUCAGGCGGUCc -3'
miRNA:   3'- uaaaCGUGc-UGC-GGUUGGUCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 17628 0.74 0.730502
Target:  5'- cGUUUGCACGACGCcCAACCGuuucUGAUUg -3'
miRNA:   3'- -UAAACGUGCUGCG-GUUGGUcu--GCUAG- -5'
8068 3' -51.6 NC_001973.1 + 21274 0.67 0.97552
Target:  5'- ---aGcCGCGGCGUCcGCCGGGCcGUCg -3'
miRNA:   3'- uaaaC-GUGCUGCGGuUGGUCUGcUAG- -5'
8068 3' -51.6 NC_001973.1 + 23489 0.68 0.951715
Target:  5'- ---gGCccaaACGaACGCCGcccucaACCAGAUGAUCg -3'
miRNA:   3'- uaaaCG----UGC-UGCGGU------UGGUCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 24931 0.66 0.986247
Target:  5'- ---cGCGCGcaacGCGCCGuaCAGAgGAUCg -3'
miRNA:   3'- uaaaCGUGC----UGCGGUugGUCUgCUAG- -5'
8068 3' -51.6 NC_001973.1 + 25845 0.66 0.987871
Target:  5'- ---cGCACGGCGCgCAGCaCAcGACGu-- -3'
miRNA:   3'- uaaaCGUGCUGCG-GUUG-GU-CUGCuag -5'
8068 3' -51.6 NC_001973.1 + 31932 0.69 0.942759
Target:  5'- ---gGUugGACGCgCGGaaAGGCGAUCa -3'
miRNA:   3'- uaaaCGugCUGCG-GUUggUCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 34307 0.68 0.951715
Target:  5'- cGUUUGCgccGCGGCGCCAACgGGuccuUGGUg -3'
miRNA:   3'- -UAAACG---UGCUGCGGUUGgUCu---GCUAg -5'
8068 3' -51.6 NC_001973.1 + 35069 0.66 0.984461
Target:  5'- ---cGcCGCGGCGCCGACguGaaGCGGUa -3'
miRNA:   3'- uaaaC-GUGCUGCGGUUGguC--UGCUAg -5'
8068 3' -51.6 NC_001973.1 + 35173 0.68 0.95582
Target:  5'- ---gGCGCGACGCagCGACCucgucgccGCGAUCa -3'
miRNA:   3'- uaaaCGUGCUGCG--GUUGGuc------UGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.