miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8068 5' -51.5 NC_001973.1 + 152375 0.84 0.284416
Target:  5'- gCGAGCCGGAcGGCCGGCGcgggcgGGCGCGGg -3'
miRNA:   3'- -GUUUGGCUUaCCGGCUGUa-----UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 23001 0.75 0.69817
Target:  5'- --cGCCGAcgugcaaaagaucuUGGCCGACGUGGUGUGGg -3'
miRNA:   3'- guuUGGCUu-------------ACCGGCUGUAUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 95710 0.75 0.713675
Target:  5'- --cGCCGAcggcgcgGUGcGCCGGCuguUGGCGCAGg -3'
miRNA:   3'- guuUGGCU-------UAC-CGGCUGu--AUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 42019 0.74 0.73307
Target:  5'- uCAAACCGGcgagcgucgaccUGGCCGAgGUgAGCGCGGg -3'
miRNA:   3'- -GUUUGGCUu-----------ACCGGCUgUA-UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 69509 0.73 0.784225
Target:  5'- -cGACCGucuUGGCgcucuuguacuUGACGUAGCGCAGc -3'
miRNA:   3'- guUUGGCuu-ACCG-----------GCUGUAUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 61093 0.73 0.785174
Target:  5'- gCAGGCCGcgcGGCCGACGgagcagcggcggcggGGCGCGGc -3'
miRNA:   3'- -GUUUGGCuuaCCGGCUGUa--------------UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 30352 0.73 0.820972
Target:  5'- gCAGGCCGAGUucgGGCCGcC--GGCGCGGc -3'
miRNA:   3'- -GUUUGGCUUA---CCGGCuGuaUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 16826 0.72 0.829724
Target:  5'- aCGGACugCGAcUGGUCGACAaagGGCGCGGu -3'
miRNA:   3'- -GUUUG--GCUuACCGGCUGUa--UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 102710 0.71 0.870455
Target:  5'- aCGGGCCGGucaagauuuucGUGGCCGcCAgucgcgAGCGCAa -3'
miRNA:   3'- -GUUUGGCU-----------UACCGGCuGUa-----UCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 152791 0.71 0.870455
Target:  5'- -cAACgGggUGGCCGACAaGGUGUu- -3'
miRNA:   3'- guUUGgCuuACCGGCUGUaUCGCGuc -5'
8068 5' -51.5 NC_001973.1 + 7927 0.71 0.892216
Target:  5'- gGAGCgCGugugcgcGGCCGGCGUGGUGCAc -3'
miRNA:   3'- gUUUG-GCuua----CCGGCUGUAUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 76576 0.7 0.905517
Target:  5'- aCGAAUCGAgcGUGGCCGAgGcGGCcaaGCAGu -3'
miRNA:   3'- -GUUUGGCU--UACCGGCUgUaUCG---CGUC- -5'
8068 5' -51.5 NC_001973.1 + 36842 0.7 0.917819
Target:  5'- -cGACCGGccugagGGCCGACucGGCGCGc -3'
miRNA:   3'- guUUGGCUua----CCGGCUGuaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 64105 0.7 0.917819
Target:  5'- aCAGGCCGAc-GGCuCGACGgGGCGguGc -3'
miRNA:   3'- -GUUUGGCUuaCCG-GCUGUaUCGCguC- -5'
8068 5' -51.5 NC_001973.1 + 152296 0.7 0.92359
Target:  5'- aCAGACUGAc-GGUCGAUcgAGCGCGc -3'
miRNA:   3'- -GUUUGGCUuaCCGGCUGuaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 6408 0.7 0.927478
Target:  5'- -uGGCCGAGUGcgcggcggcggcgcGCCGACG-AGCGCGc -3'
miRNA:   3'- guUUGGCUUAC--------------CGGCUGUaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 14339 0.7 0.929106
Target:  5'- -cAACCGGccgcacuuggcGUGGUCGGCGUggucgacggGGCGCGGc -3'
miRNA:   3'- guUUGGCU-----------UACCGGCUGUA---------UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 45257 0.69 0.944129
Target:  5'- uGuuCUGcg-GGCCGGCAaagUAGCGCGGa -3'
miRNA:   3'- gUuuGGCuuaCCGGCUGU---AUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 49702 0.69 0.949936
Target:  5'- uCGAGCCGcgccgugcaguauccGGCCGACG-AGCGCAa -3'
miRNA:   3'- -GUUUGGCuua------------CCGGCUGUaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 59293 0.69 0.95289
Target:  5'- -cGACCGGucgGGCCGGCcc-GCGCGc -3'
miRNA:   3'- guUUGGCUua-CCGGCUGuauCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.