miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8068 5' -51.5 NC_001973.1 + 6408 0.7 0.927478
Target:  5'- -uGGCCGAGUGcgcggcggcggcgcGCCGACG-AGCGCGc -3'
miRNA:   3'- guUUGGCUUAC--------------CGGCUGUaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 7927 0.71 0.892216
Target:  5'- gGAGCgCGugugcgcGGCCGGCGUGGUGCAc -3'
miRNA:   3'- gUUUG-GCuua----CCGGCUGUAUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 8172 0.67 0.982953
Target:  5'- ---gUCGGcgGGUCGACGgacgAGCGCGc -3'
miRNA:   3'- guuuGGCUuaCCGGCUGUa---UCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 10169 0.66 0.988182
Target:  5'- --cGCCGggUGGUCGACc---CGCAc -3'
miRNA:   3'- guuUGGCuuACCGGCUGuaucGCGUc -5'
8068 5' -51.5 NC_001973.1 + 11651 0.68 0.967523
Target:  5'- uGAACCGcuUGGCCGcugGCAUuucgcuGGCGCuGa -3'
miRNA:   3'- gUUUGGCuuACCGGC---UGUA------UCGCGuC- -5'
8068 5' -51.5 NC_001973.1 + 13055 0.67 0.982953
Target:  5'- --uACCGAccacaccaacgcGUugcaaGCCGugGUGGCGCAGa -3'
miRNA:   3'- guuUGGCU------------UAc----CGGCugUAUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 14339 0.7 0.929106
Target:  5'- -cAACCGGccgcacuuggcGUGGUCGGCGUggucgacggGGCGCGGc -3'
miRNA:   3'- guUUGGCU-----------UACCGGCUGUA---------UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 16826 0.72 0.829724
Target:  5'- aCGGACugCGAcUGGUCGACAaagGGCGCGGu -3'
miRNA:   3'- -GUUUG--GCUuACCGGCUGUa--UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 18896 0.66 0.991963
Target:  5'- --cACCGAAUGGCUguucaaaGACcagGGCGCc- -3'
miRNA:   3'- guuUGGCUUACCGG-------CUGua-UCGCGuc -5'
8068 5' -51.5 NC_001973.1 + 20523 0.68 0.960676
Target:  5'- uGAACCGuuUGGCCGcugGCAUuuccgaAGCGCc- -3'
miRNA:   3'- gUUUGGCuuACCGGC---UGUA------UCGCGuc -5'
8068 5' -51.5 NC_001973.1 + 23001 0.75 0.69817
Target:  5'- --cGCCGAcgugcaaaagaucuUGGCCGACGUGGUGUGGg -3'
miRNA:   3'- guuUGGCUu-------------ACCGGCUGUAUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 27843 0.66 0.9866
Target:  5'- gCGGcCCGGuUGGCCGGCGcUGGCGg-- -3'
miRNA:   3'- -GUUuGGCUuACCGGCUGU-AUCGCguc -5'
8068 5' -51.5 NC_001973.1 + 29104 0.66 0.9866
Target:  5'- cCAAACCGuacaGGUCGACGaacGCGCGc -3'
miRNA:   3'- -GUUUGGCuua-CCGGCUGUau-CGCGUc -5'
8068 5' -51.5 NC_001973.1 + 30352 0.73 0.820972
Target:  5'- gCAGGCCGAGUucgGGCCGcC--GGCGCGGc -3'
miRNA:   3'- -GUUUGGCUUA---CCGGCuGuaUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 30486 0.66 0.99091
Target:  5'- -uGGCCGcagucgGGCaCGACGguGCGCAGg -3'
miRNA:   3'- guUUGGCuua---CCG-GCUGUauCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 31614 0.67 0.976142
Target:  5'- --cACCGA---GCCGAaAUAGCGCGGc -3'
miRNA:   3'- guuUGGCUuacCGGCUgUAUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 32005 0.67 0.976142
Target:  5'- uCAGGCCGugcaacagcUGGCCGuaacaGUAGgGCAGa -3'
miRNA:   3'- -GUUUGGCuu-------ACCGGCug---UAUCgCGUC- -5'
8068 5' -51.5 NC_001973.1 + 35206 0.67 0.978365
Target:  5'- --cGCCGAcgucaccGCCGACAUgcaggccGGCGCGGa -3'
miRNA:   3'- guuUGGCUuac----CGGCUGUA-------UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 36842 0.7 0.917819
Target:  5'- -cGACCGGccugagGGCCGACucGGCGCGc -3'
miRNA:   3'- guUUGGCUua----CCGGCUGuaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 39763 0.68 0.97061
Target:  5'- cCGAGCCGAA--GCUGACGUacacgacuccgcGGCGCGa -3'
miRNA:   3'- -GUUUGGCUUacCGGCUGUA------------UCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.