miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8069 5' -53.4 NC_001973.1 + 73613 0.71 0.828728
Target:  5'- gGGCGAUCAGUUCGgacggcucgccgucCGCGCgCucGUCGc -3'
miRNA:   3'- -CCGCUAGUUAAGCa-------------GCGCG-GucCAGC- -5'
8069 5' -53.4 NC_001973.1 + 79621 0.7 0.868408
Target:  5'- uGUGAUaguugacgggCGUCGuCGCCGGGUCGu -3'
miRNA:   3'- cCGCUAguuaa-----GCAGC-GCGGUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 80043 0.68 0.948262
Target:  5'- uGGUGAUgaCGGgcUUG-CGCGCCGGGUCc -3'
miRNA:   3'- -CCGCUA--GUUa-AGCaGCGCGGUCCAGc -5'
8069 5' -53.4 NC_001973.1 + 81077 0.67 0.956332
Target:  5'- gGGacaGGUCGAUggCGuUCGCGCUGGGcgCGg -3'
miRNA:   3'- -CCg--CUAGUUAa-GC-AGCGCGGUCCa-GC- -5'
8069 5' -53.4 NC_001973.1 + 81629 0.71 0.849977
Target:  5'- gGGCGAUCuuggUCGcgCGCGCCGcuUCGg -3'
miRNA:   3'- -CCGCUAGuua-AGCa-GCGCGGUccAGC- -5'
8069 5' -53.4 NC_001973.1 + 81771 0.68 0.943879
Target:  5'- cGCGAUCA---UGUCGCGCUcGGcgCGa -3'
miRNA:   3'- cCGCUAGUuaaGCAGCGCGGuCCa-GC- -5'
8069 5' -53.4 NC_001973.1 + 82177 0.67 0.964828
Target:  5'- cGGCGAgauagccgucgaggCAGUUCuuGUCGCGCUuuucGUCGg -3'
miRNA:   3'- -CCGCUa-------------GUUAAG--CAGCGCGGuc--CAGC- -5'
8069 5' -53.4 NC_001973.1 + 83034 0.69 0.918402
Target:  5'- cGGCGggCGAggCGgCGCGCCc-GUCGa -3'
miRNA:   3'- -CCGCuaGUUaaGCaGCGCGGucCAGC- -5'
8069 5' -53.4 NC_001973.1 + 100283 0.69 0.899615
Target:  5'- gGGCGcgCAAUUCGUuuuugaaCGcCGCCucGUCGg -3'
miRNA:   3'- -CCGCuaGUUAAGCA-------GC-GCGGucCAGC- -5'
8069 5' -53.4 NC_001973.1 + 102641 0.67 0.952412
Target:  5'- cGGCGcgCGAcuggcaaacgCGcUCGUGCCAGGUgCGc -3'
miRNA:   3'- -CCGCuaGUUaa--------GC-AGCGCGGUCCA-GC- -5'
8069 5' -53.4 NC_001973.1 + 102712 0.66 0.980006
Target:  5'- gGGcCGGUCAAgauuUUCGUgGcCGCCA-GUCGc -3'
miRNA:   3'- -CC-GCUAGUU----AAGCAgC-GCGGUcCAGC- -5'
8069 5' -53.4 NC_001973.1 + 122691 0.71 0.841956
Target:  5'- cGGCGAUcCAAUcgcagcagUCGUucgacCGCGCCGucGGUCGc -3'
miRNA:   3'- -CCGCUA-GUUA--------AGCA-----GCGCGGU--CCAGC- -5'
8069 5' -53.4 NC_001973.1 + 126587 0.68 0.939261
Target:  5'- uGGCGAUCAcgUCcugggcgauGUCG-GCCAugcGGUUGg -3'
miRNA:   3'- -CCGCUAGUuaAG---------CAGCgCGGU---CCAGC- -5'
8069 5' -53.4 NC_001973.1 + 126690 0.67 0.966757
Target:  5'- aGCcGUUucggCGUCGCGCCGGGcCa -3'
miRNA:   3'- cCGcUAGuuaaGCAGCGCGGUCCaGc -5'
8069 5' -53.4 NC_001973.1 + 134976 0.68 0.939261
Target:  5'- cGGCGAUCGAguaCGUCcgggcCGUCGGG-CGg -3'
miRNA:   3'- -CCGCUAGUUaa-GCAGc----GCGGUCCaGC- -5'
8069 5' -53.4 NC_001973.1 + 136316 0.66 0.982097
Target:  5'- gGGUaGUCGAgcUCGUUGCGCUGGcUCGg -3'
miRNA:   3'- -CCGcUAGUUa-AGCAGCGCGGUCcAGC- -5'
8069 5' -53.4 NC_001973.1 + 136999 0.66 0.972644
Target:  5'- aGCcccUCGAgcgCGU-GCGCCGGGUCGc -3'
miRNA:   3'- cCGcu-AGUUaa-GCAgCGCGGUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 137089 0.7 0.872828
Target:  5'- uGGUGG-CAGUUCaUCGCGaaCAGGUCGu -3'
miRNA:   3'- -CCGCUaGUUAAGcAGCGCg-GUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 150061 0.66 0.977739
Target:  5'- aGGCuggaaaucugGGUCGAUUUcaaaaaucaaGUCGCGCC-GGUCc -3'
miRNA:   3'- -CCG----------CUAGUUAAG----------CAGCGCGGuCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.