miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8069 5' -53.4 NC_001973.1 + 1873 0.7 0.872828
Target:  5'- uGGCGAUCAcgUCc-UGCGCUAuGUCGg -3'
miRNA:   3'- -CCGCUAGUuaAGcaGCGCGGUcCAGC- -5'
8069 5' -53.4 NC_001973.1 + 2885 0.67 0.952412
Target:  5'- cGGCGGacgCGcgUCGUCGCGCUuuGcUCGc -3'
miRNA:   3'- -CCGCUa--GUuaAGCAGCGCGGucC-AGC- -5'
8069 5' -53.4 NC_001973.1 + 3696 0.66 0.980006
Target:  5'- uGGUGAUg---UCGUaGCGCC-GGUCGc -3'
miRNA:   3'- -CCGCUAguuaAGCAgCGCGGuCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 3888 0.73 0.742876
Target:  5'- cGGCGAcCGAggCGUCgcucuGCGCCGGGUa- -3'
miRNA:   3'- -CCGCUaGUUaaGCAG-----CGCGGUCCAgc -5'
8069 5' -53.4 NC_001973.1 + 5840 0.66 0.975287
Target:  5'- gGGCGcgUcGUUCGgcgagcgcaCGCGCCGGcGUCu -3'
miRNA:   3'- -CCGCuaGuUAAGCa--------GCGCGGUC-CAGc -5'
8069 5' -53.4 NC_001973.1 + 7846 0.67 0.9635
Target:  5'- cGGCGccgcgcccGUCGAgcUGgCGCGCCAGGgcgCGu -3'
miRNA:   3'- -CCGC--------UAGUUaaGCaGCGCGGUCCa--GC- -5'
8069 5' -53.4 NC_001973.1 + 8423 0.67 0.9635
Target:  5'- cGGCaaGAgccgcCGcgUCGUCGCGCCc-GUCGa -3'
miRNA:   3'- -CCG--CUa----GUuaAGCAGCGCGGucCAGC- -5'
8069 5' -53.4 NC_001973.1 + 22589 0.66 0.982097
Target:  5'- cGCGAUCcgcgagUCGaaCGCGUCGGGcCGg -3'
miRNA:   3'- cCGCUAGuua---AGCa-GCGCGGUCCaGC- -5'
8069 5' -53.4 NC_001973.1 + 33123 0.73 0.752549
Target:  5'- aGGuCGAUCAGgcgcugCGUCGCGCCcugcAGGUg- -3'
miRNA:   3'- -CC-GCUAGUUaa----GCAGCGCGG----UCCAgc -5'
8069 5' -53.4 NC_001973.1 + 34001 0.67 0.969803
Target:  5'- cGGUuGUCGAgcgCGUCGUccacgGCCcGGUCGa -3'
miRNA:   3'- -CCGcUAGUUaa-GCAGCG-----CGGuCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 39379 0.73 0.741904
Target:  5'- cGCGGUCcgaGGUcaccugcUCGacggcgCGCGCCAGGUCGg -3'
miRNA:   3'- cCGCUAG---UUA-------AGCa-----GCGCGGUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 39422 0.72 0.771567
Target:  5'- cGCGGUgAGgcgCGUCGCGuCCAGGgCGa -3'
miRNA:   3'- cCGCUAgUUaa-GCAGCGC-GGUCCaGC- -5'
8069 5' -53.4 NC_001973.1 + 40127 0.67 0.956332
Target:  5'- gGGUGG-CGAcUCGUCGCGCCcaucGUCu -3'
miRNA:   3'- -CCGCUaGUUaAGCAGCGCGGuc--CAGc -5'
8069 5' -53.4 NC_001973.1 + 45443 0.7 0.8578
Target:  5'- gGGCGGUCGggUUGUCGCa-CAGGUgCGc -3'
miRNA:   3'- -CCGCUAGUuaAGCAGCGcgGUCCA-GC- -5'
8069 5' -53.4 NC_001973.1 + 45620 0.69 0.900256
Target:  5'- cGGCGAUCAggUCcaCGCGCUc-GUCGa -3'
miRNA:   3'- -CCGCUAGUuaAGcaGCGCGGucCAGC- -5'
8069 5' -53.4 NC_001973.1 + 51465 0.66 0.975287
Target:  5'- gGGCGAgcUCGAg----CG-GCCGGGUCGa -3'
miRNA:   3'- -CCGCU--AGUUaagcaGCgCGGUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 52611 0.66 0.982097
Target:  5'- aGCGAUCAAagucaaaGUCGggaCGCC-GGUCGa -3'
miRNA:   3'- cCGCUAGUUaag----CAGC---GCGGuCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 53333 0.67 0.969803
Target:  5'- gGGCG-UCGAUgCGccCGCGCC-GGUCc -3'
miRNA:   3'- -CCGCuAGUUAaGCa-GCGCGGuCCAGc -5'
8069 5' -53.4 NC_001973.1 + 54022 0.73 0.733107
Target:  5'- cGCGAUCGGguugUCGUCGgGC-AGGUUGu -3'
miRNA:   3'- cCGCUAGUUa---AGCAGCgCGgUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 72476 0.69 0.900256
Target:  5'- cGGCGGacgcguaaaaUCuuacgCGUCG-GCCGGGUCGc -3'
miRNA:   3'- -CCGCU----------AGuuaa-GCAGCgCGGUCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.