miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8069 5' -53.4 NC_001973.1 + 54022 0.73 0.733107
Target:  5'- cGCGAUCGGguugUCGUCGgGC-AGGUUGu -3'
miRNA:   3'- cCGCUAGUUa---AGCAGCgCGgUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 39379 0.73 0.741904
Target:  5'- cGCGGUCcgaGGUcaccugcUCGacggcgCGCGCCAGGUCGg -3'
miRNA:   3'- cCGCUAG---UUA-------AGCa-----GCGCGGUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 3888 0.73 0.742876
Target:  5'- cGGCGAcCGAggCGUCgcucuGCGCCGGGUa- -3'
miRNA:   3'- -CCGCUaGUUaaGCAG-----CGCGGUCCAgc -5'
8069 5' -53.4 NC_001973.1 + 33123 0.73 0.752549
Target:  5'- aGGuCGAUCAGgcgcugCGUCGCGCCcugcAGGUg- -3'
miRNA:   3'- -CC-GCUAGUUaa----GCAGCGCGG----UCCAgc -5'
8069 5' -53.4 NC_001973.1 + 39422 0.72 0.771567
Target:  5'- cGCGGUgAGgcgCGUCGCGuCCAGGgCGa -3'
miRNA:   3'- cCGCUAgUUaa-GCAGCGC-GGUCCaGC- -5'
8069 5' -53.4 NC_001973.1 + 73613 0.71 0.828728
Target:  5'- gGGCGAUCAGUUCGgacggcucgccgucCGCGCgCucGUCGc -3'
miRNA:   3'- -CCGCUAGUUAAGCa-------------GCGCG-GucCAGC- -5'
8069 5' -53.4 NC_001973.1 + 122691 0.71 0.841956
Target:  5'- cGGCGAUcCAAUcgcagcagUCGUucgacCGCGCCGucGGUCGc -3'
miRNA:   3'- -CCGCUA-GUUA--------AGCA-----GCGCGGU--CCAGC- -5'
8069 5' -53.4 NC_001973.1 + 81629 0.71 0.849977
Target:  5'- gGGCGAUCuuggUCGcgCGCGCCGcuUCGg -3'
miRNA:   3'- -CCGCUAGuua-AGCa-GCGCGGUccAGC- -5'
8069 5' -53.4 NC_001973.1 + 45443 0.7 0.8578
Target:  5'- gGGCGGUCGggUUGUCGCa-CAGGUgCGc -3'
miRNA:   3'- -CCGCUAGUuaAGCAGCGcgGUCCA-GC- -5'
8069 5' -53.4 NC_001973.1 + 79621 0.7 0.868408
Target:  5'- uGUGAUaguugacgggCGUCGuCGCCGGGUCGu -3'
miRNA:   3'- cCGCUAguuaa-----GCAGC-GCGGUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 137089 0.7 0.872828
Target:  5'- uGGUGG-CAGUUCaUCGCGaaCAGGUCGu -3'
miRNA:   3'- -CCGCUaGUUAAGcAGCGCg-GUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 1873 0.7 0.872828
Target:  5'- uGGCGAUCAcgUCc-UGCGCUAuGUCGg -3'
miRNA:   3'- -CCGCUAGUuaAGcaGCGCGGUcCAGC- -5'
8069 5' -53.4 NC_001973.1 + 100283 0.69 0.899615
Target:  5'- gGGCGcgCAAUUCGUuuuugaaCGcCGCCucGUCGg -3'
miRNA:   3'- -CCGCuaGUUAAGCA-------GC-GCGGucCAGC- -5'
8069 5' -53.4 NC_001973.1 + 45620 0.69 0.900256
Target:  5'- cGGCGAUCAggUCcaCGCGCUc-GUCGa -3'
miRNA:   3'- -CCGCUAGUuaAGcaGCGCGGucCAGC- -5'
8069 5' -53.4 NC_001973.1 + 72476 0.69 0.900256
Target:  5'- cGGCGGacgcguaaaaUCuuacgCGUCG-GCCGGGUCGc -3'
miRNA:   3'- -CCGCU----------AGuuaa-GCAGCgCGGUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 83034 0.69 0.918402
Target:  5'- cGGCGggCGAggCGgCGCGCCc-GUCGa -3'
miRNA:   3'- -CCGCuaGUUaaGCaGCGCGGucCAGC- -5'
8069 5' -53.4 NC_001973.1 + 126587 0.68 0.939261
Target:  5'- uGGCGAUCAcgUCcugggcgauGUCG-GCCAugcGGUUGg -3'
miRNA:   3'- -CCGCUAGUuaAG---------CAGCgCGGU---CCAGC- -5'
8069 5' -53.4 NC_001973.1 + 134976 0.68 0.939261
Target:  5'- cGGCGAUCGAguaCGUCcgggcCGUCGGG-CGg -3'
miRNA:   3'- -CCGCUAGUUaa-GCAGc----GCGGUCCaGC- -5'
8069 5' -53.4 NC_001973.1 + 81771 0.68 0.943879
Target:  5'- cGCGAUCA---UGUCGCGCUcGGcgCGa -3'
miRNA:   3'- cCGCUAGUuaaGCAGCGCGGuCCa-GC- -5'
8069 5' -53.4 NC_001973.1 + 80043 0.68 0.948262
Target:  5'- uGGUGAUgaCGGgcUUG-CGCGCCGGGUCc -3'
miRNA:   3'- -CCGCUA--GUUa-AGCaGCGCGGUCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.