Results 21 - 38 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 79703 | 0.71 | 0.988691 |
Target: 5'- uUUGCCGgcuuUGGCGCGucGggUCGg -3' miRNA: 3'- uAGCGGCaaauGCUGCGUuuCuuAGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 79977 | 0.7 | 0.992518 |
Target: 5'- gAUCGCCGUUgcCGG-GCAGAaAGUCGa -3' miRNA: 3'- -UAGCGGCAAauGCUgCGUUUcUUAGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 80520 | 0.68 | 0.998595 |
Target: 5'- uGUCGCCGUaUAUGACGgaGAAGuuuauuuUCGa -3' miRNA: 3'- -UAGCGGCAaAUGCUGCg-UUUCuu-----AGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 81937 | 0.67 | 0.999503 |
Target: 5'- aAUCGgCGUc--CGGCGCGGAGAAgCGc -3' miRNA: 3'- -UAGCgGCAaauGCUGCGUUUCUUaGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 83411 | 0.69 | 0.997089 |
Target: 5'- cUCGCCucGUcgGCGACGCGgcAAGAAUa- -3' miRNA: 3'- uAGCGG--CAaaUGCUGCGU--UUCUUAgc -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 90174 | 0.72 | 0.971073 |
Target: 5'- aAUCGCCGUgcauccgaaGCGGCGC-GAGAcuGUCGu -3' miRNA: 3'- -UAGCGGCAaa-------UGCUGCGuUUCU--UAGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 92119 | 0.66 | 0.999808 |
Target: 5'- aAUCGaCCGgucUUGCGAauCGUAGgcAGAAUCGu -3' miRNA: 3'- -UAGC-GGCa--AAUGCU--GCGUU--UCUUAGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 93295 | 0.76 | 0.883483 |
Target: 5'- gAUUGCCGUgUACGACGCAA--AAUUGg -3' miRNA: 3'- -UAGCGGCAaAUGCUGCGUUucUUAGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 95420 | 0.66 | 0.999754 |
Target: 5'- -cCGCUGcuggGCGACGCGGAGcg-CGa -3' miRNA: 3'- uaGCGGCaaa-UGCUGCGUUUCuuaGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 105342 | 0.76 | 0.888574 |
Target: 5'- uUCGCCGUguuguucucgacgaaGCGGCGCGGAGGcGUCGg -3' miRNA: 3'- uAGCGGCAaa-------------UGCUGCGUUUCU-UAGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 108749 | 0.67 | 0.999233 |
Target: 5'- cUCGUCGac-GCGGCGCGGGGGAg-- -3' miRNA: 3'- uAGCGGCaaaUGCUGCGUUUCUUagc -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 124241 | 0.69 | 0.996553 |
Target: 5'- -cCGCCGUUUACGAagcgcugcugUGCAuGGAcgUGg -3' miRNA: 3'- uaGCGGCAAAUGCU----------GCGUuUCUuaGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 136587 | 0.67 | 0.999381 |
Target: 5'- -gCGCCGgc-GCGACGCucAGcucGUCGg -3' miRNA: 3'- uaGCGGCaaaUGCUGCGuuUCu--UAGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 138290 | 0.67 | 0.999604 |
Target: 5'- -aCGCCGUUgua-GCGCAGAcAGUCGa -3' miRNA: 3'- uaGCGGCAAaugcUGCGUUUcUUAGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 143165 | 0.68 | 0.998301 |
Target: 5'- -aCGCCGg--GCGGCuGCGu-GGAUCGg -3' miRNA: 3'- uaGCGGCaaaUGCUG-CGUuuCUUAGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 145025 | 0.66 | 0.999687 |
Target: 5'- -gCGCCcgagUGCGGCGCGAGcGcGUCGa -3' miRNA: 3'- uaGCGGcaa-AUGCUGCGUUU-CuUAGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 146517 | 0.67 | 0.999381 |
Target: 5'- gAUCGUCGg--GCa--GCAGAGggUCGa -3' miRNA: 3'- -UAGCGGCaaaUGcugCGUUUCuuAGC- -5' |
|||||||
8070 | 5' | -47.6 | NC_001973.1 | + | 154036 | 0.72 | 0.967948 |
Target: 5'- uGUCGCCGggccCGAUGCAGuuuGAGUCu -3' miRNA: 3'- -UAGCGGCaaauGCUGCGUUu--CUUAGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home