miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8073 5' -53.5 NC_001978.2 + 29806 0.67 0.70448
Target:  5'- aGUuCCGG-UC-CGUCGUGCUcAACGa -3'
miRNA:   3'- aCAuGGCCuAGuGCAGCGCGAcUUGC- -5'
8073 5' -53.5 NC_001978.2 + 30251 0.72 0.403583
Target:  5'- gUGUGCCGucaacGGUCGCGUacacguaGCGCUcGAACGc -3'
miRNA:   3'- -ACAUGGC-----CUAGUGCAg------CGCGA-CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 30402 0.72 0.384057
Target:  5'- gGUGCCGugucgcucgacaaGGUCACGUCG-GCUGAgaacGCGg -3'
miRNA:   3'- aCAUGGC-------------CUAGUGCAGCgCGACU----UGC- -5'
8073 5' -53.5 NC_001978.2 + 30925 0.68 0.637331
Target:  5'- aGUGCUuGAgaAUGUCGCGCUGAgugGCGc -3'
miRNA:   3'- aCAUGGcCUagUGCAGCGCGACU---UGC- -5'
8073 5' -53.5 NC_001978.2 + 31473 0.68 0.6486
Target:  5'- cGUcCCGGGUUGCGgCGCucuuccGCUGAGCu -3'
miRNA:   3'- aCAuGGCCUAGUGCaGCG------CGACUUGc -5'
8073 5' -53.5 NC_001978.2 + 31704 0.69 0.558877
Target:  5'- gGUG-CGGAUucgauucgCGCGaCGCGCUGAACa -3'
miRNA:   3'- aCAUgGCCUA--------GUGCaGCGCGACUUGc -5'
8073 5' -53.5 NC_001978.2 + 32106 0.66 0.733978
Target:  5'- cGUGCCGuGAUgaccccggcucaggCGCGUCaGCuugccgcaugGCUGAACGa -3'
miRNA:   3'- aCAUGGC-CUA--------------GUGCAG-CG----------CGACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 32261 0.7 0.536882
Target:  5'- cGUcgACCGGGUCACGaCGCccaGC-GGACGg -3'
miRNA:   3'- aCA--UGGCCUAGUGCaGCG---CGaCUUGC- -5'
8073 5' -53.5 NC_001978.2 + 34132 0.66 0.737212
Target:  5'- cGUGcCCGGGUgUGCGUC-CGCcgGAGCGu -3'
miRNA:   3'- aCAU-GGCCUA-GUGCAGcGCGa-CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 36434 0.66 0.726396
Target:  5'- --aGCCGGAccaugcccauUCGCuGUgCGCGCUGA-CGa -3'
miRNA:   3'- acaUGGCCU----------AGUG-CA-GCGCGACUuGC- -5'
8073 5' -53.5 NC_001978.2 + 37880 0.69 0.558877
Target:  5'- cGUcCCGuacaACGUCGCGCgUGAGCGg -3'
miRNA:   3'- aCAuGGCcuagUGCAGCGCG-ACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 38184 0.67 0.682267
Target:  5'- cGUGCCGGAgCAa-UCGCcCUGggUGg -3'
miRNA:   3'- aCAUGGCCUaGUgcAGCGcGACuuGC- -5'
8073 5' -53.5 NC_001978.2 + 38578 0.7 0.515194
Target:  5'- --cGCCGGG-CACGUCGgCGUucgGGACGg -3'
miRNA:   3'- acaUGGCCUaGUGCAGC-GCGa--CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 38594 0.68 0.602412
Target:  5'- cUGaACCGGcccccGUCGCGcucgacuUCGCGCUGAAgGu -3'
miRNA:   3'- -ACaUGGCC-----UAGUGC-------AGCGCGACUUgC- -5'
8073 5' -53.5 NC_001978.2 + 39101 0.79 0.153201
Target:  5'- --cACCGGAUUACGUCGgGCUcGAACu -3'
miRNA:   3'- acaUGGCCUAGUGCAGCgCGA-CUUGc -5'
8073 5' -53.5 NC_001978.2 + 39410 0.79 0.162056
Target:  5'- --gGCCGGAgcgugaUCGgGUCGCGCUGAAUGc -3'
miRNA:   3'- acaUGGCCU------AGUgCAGCGCGACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 39786 0.69 0.581118
Target:  5'- uUGUugCGGAgCGCGcCGaCGCccUGAACGc -3'
miRNA:   3'- -ACAugGCCUaGUGCaGC-GCG--ACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 41182 0.71 0.442458
Target:  5'- cUGUGCCugauaGGUgGCGUgGUGCUGAGCa -3'
miRNA:   3'- -ACAUGGc----CUAgUGCAgCGCGACUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.