miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8073 5' -53.5 NC_001978.2 + 1139 0.7 0.493871
Target:  5'- aGUACCGGGUCgGgGUgGCGUUG-GCGu -3'
miRNA:   3'- aCAUGGCCUAG-UgCAgCGCGACuUGC- -5'
8073 5' -53.5 NC_001978.2 + 1745 0.69 0.569971
Target:  5'- -uUACCGGGUCGUGUCGgcggaCGCcGGACGg -3'
miRNA:   3'- acAUGGCCUAGUGCAGC-----GCGaCUUGC- -5'
8073 5' -53.5 NC_001978.2 + 1775 1.09 0.001233
Target:  5'- uUGUACCGGAUCACGUCGCGCUGAACGu -3'
miRNA:   3'- -ACAUGGCCUAGUGCAGCGCGACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 4519 0.7 0.525996
Target:  5'- cGUGCCGGAagACGU-GCGCcccaguaggGAACGc -3'
miRNA:   3'- aCAUGGCCUagUGCAgCGCGa--------CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 4535 0.68 0.659853
Target:  5'- --gACCGuuGGUCGCGaCGuCGCUGAGCu -3'
miRNA:   3'- acaUGGC--CUAGUGCaGC-GCGACUUGc -5'
8073 5' -53.5 NC_001978.2 + 5281 0.66 0.726396
Target:  5'- -uUACCGGccuUCGugcCGUCGCGCUucucagGGGCGa -3'
miRNA:   3'- acAUGGCCu--AGU---GCAGCGCGA------CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 6029 0.66 0.747918
Target:  5'- gGUAaacGAUCugGUCaGUGCUGAACu -3'
miRNA:   3'- aCAUggcCUAGugCAG-CGCGACUUGc -5'
8073 5' -53.5 NC_001978.2 + 6566 0.69 0.569971
Target:  5'- cGUGCCGGGUgACGuucagugcaccuUCGCGgaG-ACGg -3'
miRNA:   3'- aCAUGGCCUAgUGC------------AGCGCgaCuUGC- -5'
8073 5' -53.5 NC_001978.2 + 6736 0.68 0.603536
Target:  5'- --cGCCGGG-CAauccgGUCGaCGCUGAGCGc -3'
miRNA:   3'- acaUGGCCUaGUg----CAGC-GCGACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 6751 0.69 0.569971
Target:  5'- cGUaGCCGG-UCACGuugguuggcuUCGCGCcgGAGCGc -3'
miRNA:   3'- aCA-UGGCCuAGUGC----------AGCGCGa-CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 9028 0.69 0.569971
Target:  5'- --cGCCGGuAUCGCuGagGCGCUuGAGCGg -3'
miRNA:   3'- acaUGGCC-UAGUG-CagCGCGA-CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 13243 0.67 0.671079
Target:  5'- --cGCCGGAaCGC-UCaCGCUGAACGc -3'
miRNA:   3'- acaUGGCCUaGUGcAGcGCGACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 14380 0.68 0.6486
Target:  5'- -uUACCGGcacgacGUCcCG-CGCGCUGGGCa -3'
miRNA:   3'- acAUGGCC------UAGuGCaGCGCGACUUGc -5'
8073 5' -53.5 NC_001978.2 + 14987 0.71 0.48336
Target:  5'- cGUGCCGG--UACGcaCGCGCUGAuagACGa -3'
miRNA:   3'- aCAUGGCCuaGUGCa-GCGCGACU---UGC- -5'
8073 5' -53.5 NC_001978.2 + 15691 0.66 0.768946
Target:  5'- --cGCCGGAaC-CGUCGagcCGUUGAACGc -3'
miRNA:   3'- acaUGGCCUaGuGCAGC---GCGACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 19875 0.68 0.614788
Target:  5'- cGUGCCGGGggccgaCGCGauucaCGCGCUccgGAACGc -3'
miRNA:   3'- aCAUGGCCUa-----GUGCa----GCGCGA---CUUGC- -5'
8073 5' -53.5 NC_001978.2 + 23903 0.71 0.442458
Target:  5'- --cGCCGGAagCcCGUCGCGCUGuGCu -3'
miRNA:   3'- acaUGGCCUa-GuGCAGCGCGACuUGc -5'
8073 5' -53.5 NC_001978.2 + 24314 0.66 0.726396
Target:  5'- cGUGCCGGggCuuGUCGuCGUUcAGCGu -3'
miRNA:   3'- aCAUGGCCuaGugCAGC-GCGAcUUGC- -5'
8073 5' -53.5 NC_001978.2 + 25861 0.71 0.44146
Target:  5'- --gGCCGGAgucggcuUCACGcUGCGCcUGAGCGa -3'
miRNA:   3'- acaUGGCCU-------AGUGCaGCGCG-ACUUGC- -5'
8073 5' -53.5 NC_001978.2 + 25899 0.74 0.324455
Target:  5'- -uUGCCGGGcacgguaucgaCGCGUaCGCGCUGAACGu -3'
miRNA:   3'- acAUGGCCUa----------GUGCA-GCGCGACUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.