Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 41182 | 0.71 | 0.442458 |
Target: 5'- cUGUGCCugauaGGUgGCGUgGUGCUGAGCa -3' miRNA: 3'- -ACAUGGc----CUAgUGCAgCGCGACUUGc -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 39786 | 0.69 | 0.581118 |
Target: 5'- uUGUugCGGAgCGCGcCGaCGCccUGAACGc -3' miRNA: 3'- -ACAugGCCUaGUGCaGC-GCG--ACUUGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 39410 | 0.79 | 0.162056 |
Target: 5'- --gGCCGGAgcgugaUCGgGUCGCGCUGAAUGc -3' miRNA: 3'- acaUGGCCU------AGUgCAGCGCGACUUGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 39101 | 0.79 | 0.153201 |
Target: 5'- --cACCGGAUUACGUCGgGCUcGAACu -3' miRNA: 3'- acaUGGCCUAGUGCAGCgCGA-CUUGc -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 38594 | 0.68 | 0.602412 |
Target: 5'- cUGaACCGGcccccGUCGCGcucgacuUCGCGCUGAAgGu -3' miRNA: 3'- -ACaUGGCC-----UAGUGC-------AGCGCGACUUgC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 38578 | 0.7 | 0.515194 |
Target: 5'- --cGCCGGG-CACGUCGgCGUucgGGACGg -3' miRNA: 3'- acaUGGCCUaGUGCAGC-GCGa--CUUGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 38184 | 0.67 | 0.682267 |
Target: 5'- cGUGCCGGAgCAa-UCGCcCUGggUGg -3' miRNA: 3'- aCAUGGCCUaGUgcAGCGcGACuuGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 37880 | 0.69 | 0.558877 |
Target: 5'- cGUcCCGuacaACGUCGCGCgUGAGCGg -3' miRNA: 3'- aCAuGGCcuagUGCAGCGCG-ACUUGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 36434 | 0.66 | 0.726396 |
Target: 5'- --aGCCGGAccaugcccauUCGCuGUgCGCGCUGA-CGa -3' miRNA: 3'- acaUGGCCU----------AGUG-CA-GCGCGACUuGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 34132 | 0.66 | 0.737212 |
Target: 5'- cGUGcCCGGGUgUGCGUC-CGCcgGAGCGu -3' miRNA: 3'- aCAU-GGCCUA-GUGCAGcGCGa-CUUGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 32261 | 0.7 | 0.536882 |
Target: 5'- cGUcgACCGGGUCACGaCGCccaGC-GGACGg -3' miRNA: 3'- aCA--UGGCCUAGUGCaGCG---CGaCUUGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 32106 | 0.66 | 0.733978 |
Target: 5'- cGUGCCGuGAUgaccccggcucaggCGCGUCaGCuugccgcaugGCUGAACGa -3' miRNA: 3'- aCAUGGC-CUA--------------GUGCAG-CG----------CGACUUGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 31704 | 0.69 | 0.558877 |
Target: 5'- gGUG-CGGAUucgauucgCGCGaCGCGCUGAACa -3' miRNA: 3'- aCAUgGCCUA--------GUGCaGCGCGACUUGc -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 31473 | 0.68 | 0.6486 |
Target: 5'- cGUcCCGGGUUGCGgCGCucuuccGCUGAGCu -3' miRNA: 3'- aCAuGGCCUAGUGCaGCG------CGACUUGc -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 30925 | 0.68 | 0.637331 |
Target: 5'- aGUGCUuGAgaAUGUCGCGCUGAgugGCGc -3' miRNA: 3'- aCAUGGcCUagUGCAGCGCGACU---UGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 30402 | 0.72 | 0.384057 |
Target: 5'- gGUGCCGugucgcucgacaaGGUCACGUCG-GCUGAgaacGCGg -3' miRNA: 3'- aCAUGGC-------------CUAGUGCAGCgCGACU----UGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 30251 | 0.72 | 0.403583 |
Target: 5'- gUGUGCCGucaacGGUCGCGUacacguaGCGCUcGAACGc -3' miRNA: 3'- -ACAUGGC-----CUAGUGCAg------CGCGA-CUUGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 29806 | 0.67 | 0.70448 |
Target: 5'- aGUuCCGG-UC-CGUCGUGCUcAACGa -3' miRNA: 3'- aCAuGGCCuAGuGCAGCGCGAcUUGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 25899 | 0.74 | 0.324455 |
Target: 5'- -uUGCCGGGcacgguaucgaCGCGUaCGCGCUGAACGu -3' miRNA: 3'- acAUGGCCUa----------GUGCA-GCGCGACUUGC- -5' |
|||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 25861 | 0.71 | 0.44146 |
Target: 5'- --gGCCGGAgucggcuUCACGcUGCGCcUGAGCGa -3' miRNA: 3'- acaUGGCCU-------AGUGCaGCGCG-ACUUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home