Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8075 | 5' | -53.9 | NC_001978.2 | + | 18146 | 0.66 | 0.6988 |
Target: 5'- uGGGaCGCGCuGAAGGUcccGAAGGucUGAGCg -3' miRNA: 3'- -CUC-GUGCGcCUUCCA---CUUCCu-GCUUG- -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 33490 | 0.66 | 0.6988 |
Target: 5'- uGGCGCGC-GAAGGUGcGGuauGCGGACc -3' miRNA: 3'- cUCGUGCGcCUUCCACuUCc--UGCUUG- -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 15746 | 0.66 | 0.68757 |
Target: 5'- cGGGCgGCGUGuggucGAAGGUGucGGACGGc- -3' miRNA: 3'- -CUCG-UGCGC-----CUUCCACuuCCUGCUug -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 32858 | 0.66 | 0.676284 |
Target: 5'- -cGCACaaGGAAGGUGAccGACGcAUg -3' miRNA: 3'- cuCGUGcgCCUUCCACUucCUGCuUG- -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 31504 | 0.67 | 0.630808 |
Target: 5'- gGGGCACGaCGuGAAGGUGuggcgcguAGGACa--- -3' miRNA: 3'- -CUCGUGC-GC-CUUCCACu-------UCCUGcuug -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 33919 | 0.67 | 0.619414 |
Target: 5'- gGAGCAuCGgGGGAGGcGAccGGCGAAg -3' miRNA: 3'- -CUCGU-GCgCCUUCCaCUucCUGCUUg -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 21199 | 0.68 | 0.585345 |
Target: 5'- cGAGaa-GCGGAAGGcGAAGG-CGGAg -3' miRNA: 3'- -CUCgugCGCCUUCCaCUUCCuGCUUg -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 22559 | 0.68 | 0.574059 |
Target: 5'- cGGCuCGCGGAAGGUGAucGGuaagccggucgcACGGAa -3' miRNA: 3'- cUCGuGCGCCUUCCACUu-CC------------UGCUUg -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 25804 | 0.69 | 0.507712 |
Target: 5'- gGAGCugGCcGAAGGUcuGAAGGGCu--- -3' miRNA: 3'- -CUCGugCGcCUUCCA--CUUCCUGcuug -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 28945 | 0.7 | 0.44483 |
Target: 5'- aAGCGCGacCGGAAGGUGuucAAGGGCGc-- -3' miRNA: 3'- cUCGUGC--GCCUUCCAC---UUCCUGCuug -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 5759 | 0.71 | 0.395913 |
Target: 5'- cGGCucagAUGCGGAAGcUGAAGGacGCGAACg -3' miRNA: 3'- cUCG----UGCGCCUUCcACUUCC--UGCUUG- -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 741 | 0.72 | 0.368277 |
Target: 5'- uGGCguagGCGCcGAAGGUGAAGccGACGAGCc -3' miRNA: 3'- cUCG----UGCGcCUUCCACUUC--CUGCUUG- -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 35569 | 0.73 | 0.317093 |
Target: 5'- cGGCGCGuUGGggGacGUGAAGG-CGAGCg -3' miRNA: 3'- cUCGUGC-GCCuuC--CACUUCCuGCUUG- -5' |
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8075 | 5' | -53.9 | NC_001978.2 | + | 4651 | 1.09 | 0.000907 |
Target: 5'- cGAGCACGCGGAAGGUGAAGGACGAACc -3' miRNA: 3'- -CUCGUGCGCCUUCCACUUCCUGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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