miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8079 3' -53.6 NC_001978.2 + 39402 0.66 0.782263
Target:  5'- cGUGAucGGGUcGCGCUGAauGCGguaACCCu- -3'
miRNA:   3'- -CGCU--UCCA-CGUGACU--UGCag-UGGGcc -5'
8079 3' -53.6 NC_001978.2 + 23515 0.66 0.782263
Target:  5'- gGCGAAGGaGUACgacGCGccgaACCCGGc -3'
miRNA:   3'- -CGCUUCCaCGUGacuUGCag--UGGGCC- -5'
8079 3' -53.6 NC_001978.2 + 35575 0.66 0.779222
Target:  5'- cCGGAGacgGCGCcccUGAGCGUCGgcgcgaccgaagacCCCGGg -3'
miRNA:   3'- cGCUUCca-CGUG---ACUUGCAGU--------------GGGCC- -5'
8079 3' -53.6 NC_001978.2 + 9797 0.66 0.772069
Target:  5'- aGCcuGGGUGC-CgaaGAGCGUCACagCGGu -3'
miRNA:   3'- -CGcuUCCACGuGa--CUUGCAGUGg-GCC- -5'
8079 3' -53.6 NC_001978.2 + 25889 0.66 0.76588
Target:  5'- aGCGAAgggcuugccgggcacGGUaucgacgcguacGCGCUGAACGU-GCCCGu -3'
miRNA:   3'- -CGCUU---------------CCA------------CGUGACUUGCAgUGGGCc -5'
8079 3' -53.6 NC_001978.2 + 4645 0.66 0.75964
Target:  5'- cGCgGAAGGUGaaggacgaaccCUGAAgGUCGCCCc- -3'
miRNA:   3'- -CG-CUUCCACgu---------GACUUgCAGUGGGcc -5'
8079 3' -53.6 NC_001978.2 + 33782 0.66 0.751244
Target:  5'- cGCGAAGcGUGCugggcGCUcGACGUCgaACCUGa -3'
miRNA:   3'- -CGCUUC-CACG-----UGAcUUGCAG--UGGGCc -5'
8079 3' -53.6 NC_001978.2 + 41010 0.66 0.740637
Target:  5'- -gGggGGUGUcgACggauagggGggUGUC-CCCGGa -3'
miRNA:   3'- cgCuuCCACG--UGa-------CuuGCAGuGGGCC- -5'
8079 3' -53.6 NC_001978.2 + 19550 0.67 0.719094
Target:  5'- cGUGAAGGgucacgGCACg--GCGUCACCg-- -3'
miRNA:   3'- -CGCUUCCa-----CGUGacuUGCAGUGGgcc -5'
8079 3' -53.6 NC_001978.2 + 32341 0.67 0.697194
Target:  5'- cGUGAAcguccGUcCGCUGGGCGUCgugACCCGGu -3'
miRNA:   3'- -CGCUUc----CAcGUGACUUGCAG---UGGGCC- -5'
8079 3' -53.6 NC_001978.2 + 19426 0.67 0.686139
Target:  5'- cGCGAAGaGcGC-CUGAAcCGUgACCCGc -3'
miRNA:   3'- -CGCUUC-CaCGuGACUU-GCAgUGGGCc -5'
8079 3' -53.6 NC_001978.2 + 2865 0.68 0.663881
Target:  5'- cGUGAuccGGGUGCACgaaGACGUUGCCUu- -3'
miRNA:   3'- -CGCU---UCCACGUGac-UUGCAGUGGGcc -5'
8079 3' -53.6 NC_001978.2 + 26025 0.68 0.645982
Target:  5'- uGCccGGGUcGCGCUcacgccagucaguaaGGuCGUCACCCGGa -3'
miRNA:   3'- -CGcuUCCA-CGUGA---------------CUuGCAGUGGGCC- -5'
8079 3' -53.6 NC_001978.2 + 11028 0.68 0.6415
Target:  5'- cGCGAAGucgccuggGCGCUGcgGACGUC-UCCGGc -3'
miRNA:   3'- -CGCUUCca------CGUGAC--UUGCAGuGGGCC- -5'
8079 3' -53.6 NC_001978.2 + 38571 0.68 0.6415
Target:  5'- aGCGAAGcGccggGCACgucggcguucgGGACGgcggagCGCCCGGa -3'
miRNA:   3'- -CGCUUC-Ca---CGUGa----------CUUGCa-----GUGGGCC- -5'
8079 3' -53.6 NC_001978.2 + 12640 0.68 0.619083
Target:  5'- gGCGAAGGacgGCAC-GAACGUaACCgucaCGGg -3'
miRNA:   3'- -CGCUUCCa--CGUGaCUUGCAgUGG----GCC- -5'
8079 3' -53.6 NC_001978.2 + 1770 0.68 0.619083
Target:  5'- cCGGAucacGUcGCGCUGAACGUCGCacaCGGc -3'
miRNA:   3'- cGCUUc---CA-CGUGACUUGCAGUGg--GCC- -5'
8079 3' -53.6 NC_001978.2 + 41044 0.69 0.58557
Target:  5'- aGgGggGGUGCcCUauGCG-UACCCGGu -3'
miRNA:   3'- -CgCuuCCACGuGAcuUGCaGUGGGCC- -5'
8079 3' -53.6 NC_001978.2 + 20246 0.69 0.563415
Target:  5'- cGUGAAcGGcGCugauCUGAGCGUCAacguCCUGGg -3'
miRNA:   3'- -CGCUU-CCaCGu---GACUUGCAGU----GGGCC- -5'
8079 3' -53.6 NC_001978.2 + 10881 0.69 0.552419
Target:  5'- gGCGuccGGGUGgACccguguuggcGAGCGUgGCCCGGa -3'
miRNA:   3'- -CGCu--UCCACgUGa---------CUUGCAgUGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.