Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8080 | 3' | -57.2 | NC_001978.2 | + | 17416 | 0.75 | 0.126988 |
Target: 5'- -cGGUCGGCGgcaacacgaacacgaACGGCAGCGCuGAGg -3' miRNA: 3'- uuCCAGCCGCaag------------UGCCGUCGCG-UUC- -5' |
|||||||
8080 | 3' | -57.2 | NC_001978.2 | + | 30017 | 0.78 | 0.07695 |
Target: 5'- cAAGGucgUCGGCGgaCugGGCGGCGCGAa -3' miRNA: 3'- -UUCC---AGCCGCaaGugCCGUCGCGUUc -5' |
|||||||
8080 | 3' | -57.2 | NC_001978.2 | + | 21307 | 0.78 | 0.07695 |
Target: 5'- cAAGGUCGaacGCGUcgGCGGCAGCGCGAa -3' miRNA: 3'- -UUCCAGC---CGCAagUGCCGUCGCGUUc -5' |
|||||||
8080 | 3' | -57.2 | NC_001978.2 | + | 6865 | 1.05 | 0.000704 |
Target: 5'- cAAGGUCGGCGUUCACGGCAGCGCAAGc -3' miRNA: 3'- -UUCCAGCCGCAAGUGCCGUCGCGUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home