miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8081 5' -59.3 NC_001978.2 + 7121 1.04 0.000485
Target:  5'- cUUCCAAGAGUCCGCCUGCCCCUCGUAa -3'
miRNA:   3'- -AAGGUUCUCAGGCGGACGGGGAGCAU- -5'
8081 5' -59.3 NC_001978.2 + 193 0.69 0.235469
Target:  5'- -gCCGcuGAGUCCG-CUGCCCCcgUCGUGu -3'
miRNA:   3'- aaGGUu-CUCAGGCgGACGGGG--AGCAU- -5'
8081 5' -59.3 NC_001978.2 + 29145 0.68 0.268395
Target:  5'- gUCCGucacGGGUCggCGCCUGCCgCUCGa- -3'
miRNA:   3'- aAGGUu---CUCAG--GCGGACGGgGAGCau -5'
8081 5' -59.3 NC_001978.2 + 30413 0.67 0.297334
Target:  5'- gUUCCuugcuGAGU-CGCUUGCCCUUCGg- -3'
miRNA:   3'- -AAGGuu---CUCAgGCGGACGGGGAGCau -5'
8081 5' -59.3 NC_001978.2 + 11712 0.66 0.345178
Target:  5'- -aCCGGGucGUCCGgcgccggucCCUGCCCUUCGa- -3'
miRNA:   3'- aaGGUUCu-CAGGC---------GGACGGGGAGCau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.