Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8082 | 3' | -54 | NC_001978.2 | + | 35563 | 0.66 | 0.704408 |
Target: 5'- cCGGAuGUCGAGccGGaGACGGCGccccugAGCg -3' miRNA: 3'- uGCCUuCAGCUU--CCaCUGCCGU------UCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 10115 | 0.66 | 0.693236 |
Target: 5'- -aGGcaguGGUCGccuGGGUGACGuCAAGCg -3' miRNA: 3'- ugCCu---UCAGCu--UCCACUGCcGUUCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 26076 | 0.66 | 0.693236 |
Target: 5'- cGCGGAcgGGUCGAGccgacuUGACGGCGucgugcagucGGCUg -3' miRNA: 3'- -UGCCU--UCAGCUUcc----ACUGCCGU----------UCGA- -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 3665 | 0.66 | 0.670715 |
Target: 5'- gACGGAGGgugcgaaguuuUCGAAGGUGGCuaUGAGCc -3' miRNA: 3'- -UGCCUUC-----------AGCUUCCACUGccGUUCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 22557 | 0.66 | 0.670715 |
Target: 5'- gACGGcucgCgGAAGGUGAuCGGUAAGCc -3' miRNA: 3'- -UGCCuucaG-CUUCCACU-GCCGUUCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 39638 | 0.67 | 0.659391 |
Target: 5'- uGCGGAcgGGUCGAccaccuuccGGcGACGGCA-GCg -3' miRNA: 3'- -UGCCU--UCAGCUu--------CCaCUGCCGUuCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 19368 | 0.67 | 0.602588 |
Target: 5'- gACGGAcGcCGAc-GUGACGuGCAAGCg -3' miRNA: 3'- -UGCCUuCaGCUucCACUGC-CGUUCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 22591 | 0.67 | 0.602588 |
Target: 5'- cACGGAAggcGUCGGGgcgcauGGUGAcCGGCAcucAGCg -3' miRNA: 3'- -UGCCUU---CAGCUU------CCACU-GCCGU---UCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 8485 | 0.68 | 0.557562 |
Target: 5'- aGCGuGAAGUCGucGG-GAaucucgaaGGCAGGCUu -3' miRNA: 3'- -UGC-CUUCAGCuuCCaCUg-------CCGUUCGA- -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 25461 | 0.69 | 0.524426 |
Target: 5'- gGCGGcguAGUCGGcggcauccuGGGUGAgCGGCA-GCg -3' miRNA: 3'- -UGCCu--UCAGCU---------UCCACU-GCCGUuCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 7036 | 0.7 | 0.471016 |
Target: 5'- aGCGGAGucGUUGAGGGUuACgaggGGCAGGCg -3' miRNA: 3'- -UGCCUU--CAGCUUCCAcUG----CCGUUCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 22018 | 0.7 | 0.460662 |
Target: 5'- aAC-GAAGUCGAuuGaGUcGACGGCAAGCg -3' miRNA: 3'- -UGcCUUCAGCUu-C-CA-CUGCCGUUCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 35824 | 0.7 | 0.430349 |
Target: 5'- gGCGGGaguGGUCGAgcuGGGcGACGGCGuugccaagGGCUu -3' miRNA: 3'- -UGCCU---UCAGCU---UCCaCUGCCGU--------UCGA- -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 15748 | 0.74 | 0.261587 |
Target: 5'- gGCGGcguguGGUCGAAGGUgucgGACGGCGuucguGGCg -3' miRNA: 3'- -UGCCu----UCAGCUUCCA----CUGCCGU-----UCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 19148 | 0.75 | 0.222689 |
Target: 5'- gGCGGggGcCGAAGGUGcuaGcGCGAGCg -3' miRNA: 3'- -UGCCuuCaGCUUCCACug-C-CGUUCGa -5' |
|||||||
8082 | 3' | -54 | NC_001978.2 | + | 7491 | 1.07 | 0.001274 |
Target: 5'- cACGGAAGUCGAAGGUGACGGCAAGCUu -3' miRNA: 3'- -UGCCUUCAGCUUCCACUGCCGUUCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home