Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8083 | 3' | -55.3 | NC_001978.2 | + | 7575 | 0.75 | 0.200321 |
Target: 5'- -cGCGACGUCGC-UUGAGCU-GACCGg -3' miRNA: 3'- uuCGCUGCAGCGcAGCUUGAgCUGGU- -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 20382 | 0.66 | 0.645982 |
Target: 5'- gAAGCGGCGaaggccgaagucgagUCGCGcCGG--UCGGCCGa -3' miRNA: 3'- -UUCGCUGC---------------AGCGCaGCUugAGCUGGU- -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 22738 | 0.66 | 0.640379 |
Target: 5'- cGGCGucguguuCGUCGCugccgucGUCGGGCUCGcCCu -3' miRNA: 3'- uUCGCu------GCAGCG-------CAGCUUGAGCuGGu -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 1030 | 0.66 | 0.634775 |
Target: 5'- cAAGCGGCGUCGgcaacggccaUGUCGAGCguguaguaacccggCGugCGg -3' miRNA: 3'- -UUCGCUGCAGC----------GCAGCUUGa-------------GCugGU- -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 4545 | 0.67 | 0.574468 |
Target: 5'- -cGCGACGUCGC--UGAGCUacugaagcggggCGACCu -3' miRNA: 3'- uuCGCUGCAGCGcaGCUUGA------------GCUGGu -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 23642 | 0.67 | 0.545852 |
Target: 5'- gAAGaCGACGUugagCGCGUCGGcaaggguggcgcuguGCUCG-CCAa -3' miRNA: 3'- -UUC-GCUGCA----GCGCAGCU---------------UGAGCuGGU- -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 23185 | 0.67 | 0.53605 |
Target: 5'- uGAGCGGggcaaggucguuccCGUCGCGcUCGAcaaguggcguauCUCGACCGg -3' miRNA: 3'- -UUCGCU--------------GCAGCGC-AGCUu-----------GAGCUGGU- -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 37873 | 0.68 | 0.530631 |
Target: 5'- gGGGCGccgucccguacaACGUCGCGcgUGAGCgggUCGGCCGg -3' miRNA: 3'- -UUCGC------------UGCAGCGCa-GCUUG---AGCUGGU- -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 33826 | 0.68 | 0.488071 |
Target: 5'- -cGUGACGUCGCucgacuGUCGGGC-CGACg- -3' miRNA: 3'- uuCGCUGCAGCG------CAGCUUGaGCUGgu -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 14618 | 0.7 | 0.398882 |
Target: 5'- -uGCGACGgcCGUucuGUCGGagACUCGACCGa -3' miRNA: 3'- uuCGCUGCa-GCG---CAGCU--UGAGCUGGU- -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 21944 | 0.72 | 0.312897 |
Target: 5'- cAGCGACGcUUGCGUCGAcucaaUCGACUu -3' miRNA: 3'- uUCGCUGC-AGCGCAGCUug---AGCUGGu -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 2668 | 0.73 | 0.254786 |
Target: 5'- -cGCGuCGUCGCGcCGGAagaUCGACCu -3' miRNA: 3'- uuCGCuGCAGCGCaGCUUg--AGCUGGu -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 17588 | 0.76 | 0.160696 |
Target: 5'- cGGCGACGUUGgcgaCGUUGGcgGCUCGACCAc -3' miRNA: 3'- uUCGCUGCAGC----GCAGCU--UGAGCUGGU- -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 8658 | 0.66 | 0.663881 |
Target: 5'- --cCGACGUCG-G-CGGGCUCGAUCu -3' miRNA: 3'- uucGCUGCAGCgCaGCUUGAGCUGGu -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 17859 | 0.66 | 0.663881 |
Target: 5'- -cGCGGCauaguuggucguGUCgGCGUCGGACcaauUCGGCCc -3' miRNA: 3'- uuCGCUG------------CAG-CGCAGCUUG----AGCUGGu -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 19583 | 0.66 | 0.652701 |
Target: 5'- cGGCGcCGgucagcucCGUGUCGAACgucCGGCCGu -3' miRNA: 3'- uUCGCuGCa-------GCGCAGCUUGa--GCUGGU- -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 32628 | 0.66 | 0.630291 |
Target: 5'- cAGCGcCGUCGUGgcaaGAACaUUGACCu -3' miRNA: 3'- uUCGCuGCAGCGCag--CUUG-AGCUGGu -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 22407 | 0.68 | 0.509164 |
Target: 5'- aGGGCGACGUCGggauaCGUCGccUUCGACg- -3' miRNA: 3'- -UUCGCUGCAGC-----GCAGCuuGAGCUGgu -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 31947 | 0.68 | 0.498568 |
Target: 5'- aGAGCGACaGUUGU-UCGGGCUCGAauCCGu -3' miRNA: 3'- -UUCGCUG-CAGCGcAGCUUGAGCU--GGU- -5' |
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8083 | 3' | -55.3 | NC_001978.2 | + | 27670 | 0.69 | 0.477679 |
Target: 5'- -cGCGaACGUCGUGgUGAuACUCGAUCAc -3' miRNA: 3'- uuCGC-UGCAGCGCaGCU-UGAGCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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