miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8084 3' -55.8 NC_001978.2 + 26134 0.66 0.603536
Target:  5'- aUCCuGGGCgaccuugugUCGACGUACGgcgaGAGUg-- -3'
miRNA:   3'- aAGG-CCCG---------AGCUGCAUGCa---CUCGaac -5'
8084 3' -55.8 NC_001978.2 + 33792 0.66 0.569971
Target:  5'- -gCUGGGCgcUCGACGUcgaACcUGAGUUUGu -3'
miRNA:   3'- aaGGCCCG--AGCUGCA---UGcACUCGAAC- -5'
8084 3' -55.8 NC_001978.2 + 6831 0.66 0.569971
Target:  5'- gUCCcgGGGCUCaugGACGUACGgccgGAGUc-- -3'
miRNA:   3'- aAGG--CCCGAG---CUGCAUGCa---CUCGaac -5'
8084 3' -55.8 NC_001978.2 + 38579 0.67 0.536882
Target:  5'- -gCCGGGCacgUCGGCGUucgggACGgcgGAGCg-- -3'
miRNA:   3'- aaGGCCCG---AGCUGCA-----UGCa--CUCGaac -5'
8084 3' -55.8 NC_001978.2 + 17595 0.67 0.536882
Target:  5'- gUCCGGG-UCGGCGgagACG-GAGCc-- -3'
miRNA:   3'- aAGGCCCgAGCUGCa--UGCaCUCGaac -5'
8084 3' -55.8 NC_001978.2 + 28169 0.67 0.53579
Target:  5'- -gCCGGGCUCGACGUgaucuauACG-GcGCg-- -3'
miRNA:   3'- aaGGCCCGAGCUGCA-------UGCaCuCGaac -5'
8084 3' -55.8 NC_001978.2 + 23621 0.67 0.493871
Target:  5'- cUCCGGGUcgUCGGCGaGCGUGAa---- -3'
miRNA:   3'- aAGGCCCG--AGCUGCaUGCACUcgaac -5'
8084 3' -55.8 NC_001978.2 + 25940 0.68 0.470893
Target:  5'- gUUCCGGGUaCGACcuuacugacugGCGUGAGCg-- -3'
miRNA:   3'- -AAGGCCCGaGCUGca---------UGCACUCGaac -5'
8084 3' -55.8 NC_001978.2 + 9455 0.72 0.250764
Target:  5'- -aUCGGGCUCGACGguaagACGgcaaugGGGCUUc -3'
miRNA:   3'- aaGGCCCGAGCUGCa----UGCa-----CUCGAAc -5'
8084 3' -55.8 NC_001978.2 + 25426 0.73 0.218802
Target:  5'- gUUCGGGCUCGACGUcgcccaggcugagGCGcugGGGCUUc -3'
miRNA:   3'- aAGGCCCGAGCUGCA-------------UGCa--CUCGAAc -5'
8084 3' -55.8 NC_001978.2 + 7992 1.06 0.00088
Target:  5'- gUUCCGGGCUCGACGUACGUGAGCUUGa -3'
miRNA:   3'- -AAGGCCCGAGCUGCAUGCACUCGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.