Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8084 | 5' | -61.6 | NC_001978.2 | + | 35754 | 0.69 | 0.218807 |
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Target: 5'- --aACGCCGUCGCCCaGcUCGAcCACu -3' miRNA: 3'- cagUGCGGCAGCGGGcCcAGCUcGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 36071 | 0.66 | 0.333589 |
|
Target: 5'- uGUCGCaCacaaCGCCCGGGUCGgcGGCAg -3' miRNA: 3'- -CAGUGcGgca-GCGGGCCCAGC--UCGUg -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 37302 | 0.66 | 0.309745 |
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Target: 5'- --aGCGCCGUcCGCCCGaugccuaGGUCuucGCACa -3' miRNA: 3'- cagUGCGGCA-GCGGGC-------CCAGcu-CGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 37949 | 0.67 | 0.274745 |
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Target: 5'- --aGCGCCGgaaaaaCGgaaCCUGGGUCGuGCGCa -3' miRNA: 3'- cagUGCGGCa-----GC---GGGCCCAGCuCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 38096 | 0.67 | 0.30307 |
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Target: 5'- cUCGcCGUCGUCGuCCUGGGgc-AGCGCg -3' miRNA: 3'- cAGU-GCGGCAGC-GGGCCCagcUCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 39167 | 0.66 | 0.341562 |
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Target: 5'- --gACGCCGUgcCGaCCCGGGgCGAG-ACg -3' miRNA: 3'- cagUGCGGCA--GC-GGGCCCaGCUCgUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 39239 | 0.67 | 0.30307 |
|
Target: 5'- -cCAauCGUC-UCGcCCCGGGUCG-GCACg -3' miRNA: 3'- caGU--GCGGcAGC-GGGCCCAGCuCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 39562 | 0.66 | 0.324977 |
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Target: 5'- -cCGCuGCCGUCGCCgGaagguGGUCGAcccguccGCACc -3' miRNA: 3'- caGUG-CGGCAGCGGgC-----CCAGCU-------CGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 40776 | 0.68 | 0.261395 |
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Target: 5'- -cCGCGuUCGgCGUCauugaGGGUCGAGCGCu -3' miRNA: 3'- caGUGC-GGCaGCGGg----CCCAGCUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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