Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8084 | 5' | -61.6 | NC_001978.2 | + | 39562 | 0.66 | 0.324977 |
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Target: 5'- -cCGCuGCCGUCGCCgGaagguGGUCGAcccguccGCACc -3' miRNA: 3'- caGUG-CGGCAGCGGgC-----CCAGCU-------CGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 3852 | 0.66 | 0.325753 |
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Target: 5'- uUCA-GUCuUCGCCCGuGGcUUGAGCGCa -3' miRNA: 3'- cAGUgCGGcAGCGGGC-CC-AGCUCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 10355 | 0.66 | 0.325753 |
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Target: 5'- -cCACGCCGcCGCCau--UCGGGCGCc -3' miRNA: 3'- caGUGCGGCaGCGGgcccAGCUCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 17641 | 0.66 | 0.328871 |
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Target: 5'- cGUCcggaGCCGUCGCCCGguacaaGGUgaccaucaacggucuUGAGUACg -3' miRNA: 3'- -CAGug--CGGCAGCGGGC------CCA---------------GCUCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 36071 | 0.66 | 0.333589 |
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Target: 5'- uGUCGCaCacaaCGCCCGGGUCGgcGGCAg -3' miRNA: 3'- -CAGUGcGgca-GCGGGCCCAGC--UCGUg -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 32176 | 0.66 | 0.333589 |
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Target: 5'- -aCGCGCCugaGCCgGGGUCaucacGGCACg -3' miRNA: 3'- caGUGCGGcagCGGgCCCAGc----UCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 39167 | 0.66 | 0.341562 |
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Target: 5'- --gACGCCGUgcCGaCCCGGGgCGAG-ACg -3' miRNA: 3'- cagUGCGGCA--GC-GGGCCCaGCUCgUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 30691 | 0.66 | 0.341562 |
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Target: 5'- cGUC-CGCCGgagucgucUCGCCCuGGGUgGcaagcucaAGCGCa -3' miRNA: 3'- -CAGuGCGGC--------AGCGGG-CCCAgC--------UCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 24469 | 0.66 | 0.349673 |
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Target: 5'- uUCAgcgcuCGCaCGUCGCCCaGGG-CaGGCGCa -3' miRNA: 3'- cAGU-----GCG-GCAGCGGG-CCCaGcUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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