Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8084 | 5' | -61.6 | NC_001978.2 | + | 23878 | 0.69 | 0.197231 |
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Target: 5'- uUC-CGgCGaCGCC-GGGUCGAGCGCu -3' miRNA: 3'- cAGuGCgGCaGCGGgCCCAGCUCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 27311 | 0.69 | 0.197231 |
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Target: 5'- cGUCggcaGCGUCGagcaCGCCCGGGaagaaaccggCGAGCGCa -3' miRNA: 3'- -CAG----UGCGGCa---GCGGGCCCa---------GCUCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 7278 | 0.7 | 0.182288 |
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Target: 5'- uGUCGaacgcCGCCGUCagaagcgaaccgGCuCCGGcGUCGAGUACg -3' miRNA: 3'- -CAGU-----GCGGCAG------------CG-GGCC-CAGCUCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 22993 | 0.71 | 0.143327 |
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Target: 5'- -gCGCGuuGUacCGCCCGGGUUGccgacguccuucAGCACa -3' miRNA: 3'- caGUGCggCA--GCGGGCCCAGC------------UCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 4684 | 0.71 | 0.142554 |
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Target: 5'- gGUCGuCGUCGUcCGCCCGucgcugcccaccGUCGAGCACg -3' miRNA: 3'- -CAGU-GCGGCA-GCGGGCc-----------CAGCUCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 11295 | 0.72 | 0.132129 |
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Target: 5'- gGUCACGCUGaCGCuuGaGGUauaCGGGCGCg -3' miRNA: 3'- -CAGUGCGGCaGCGggC-CCA---GCUCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 13253 | 0.72 | 0.128579 |
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Target: 5'- cUCACGCUGaacgCGUCCGGGU--GGCACa -3' miRNA: 3'- cAGUGCGGCa---GCGGGCCCAgcUCGUG- -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 33899 | 0.73 | 0.106104 |
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Target: 5'- --aACGCCGUCgGCCCGacaGUCGAGCGa -3' miRNA: 3'- cagUGCGGCAG-CGGGCc--CAGCUCGUg -5' |
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| 8084 | 5' | -61.6 | NC_001978.2 | + | 7957 | 1.09 | 0.000166 |
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Target: 5'- cGUCACGCCGUCGCCCGGGUCGAGCACa -3' miRNA: 3'- -CAGUGCGGCAGCGGGCCCAGCUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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