miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8084 5' -61.6 NC_001978.2 + 12952 0.67 0.274745
Target:  5'- aUCACGCCGUCGCacCCGuacucaaUCGAGCcCg -3'
miRNA:   3'- cAGUGCGGCAGCG--GGCcc-----AGCUCGuG- -5'
8084 5' -61.6 NC_001978.2 + 15006 0.67 0.274745
Target:  5'- cGUCGCGCCauacGUUGCCCGuGcCGGuacGCACg -3'
miRNA:   3'- -CAGUGCGG----CAGCGGGCcCaGCU---CGUG- -5'
8084 5' -61.6 NC_001978.2 + 37949 0.67 0.274745
Target:  5'- --aGCGCCGgaaaaaCGgaaCCUGGGUCGuGCGCa -3'
miRNA:   3'- cagUGCGGCa-----GC---GGGCCCAGCuCGUG- -5'
8084 5' -61.6 NC_001978.2 + 25874 0.67 0.274064
Target:  5'- uUCACGCUG-CGCCUgagcgaaGGGcuugcCGGGCACg -3'
miRNA:   3'- cAGUGCGGCaGCGGG-------CCCa----GCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 26012 0.67 0.267336
Target:  5'- cUCACGCCagucaguaaggucGUCaCCCGGaaCGGGCACg -3'
miRNA:   3'- cAGUGCGG-------------CAGcGGGCCcaGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 25509 0.68 0.261395
Target:  5'- uGUCgACGUCGuUCGCCCGGuUCccGCGCa -3'
miRNA:   3'- -CAG-UGCGGC-AGCGGGCCcAGcuCGUG- -5'
8084 5' -61.6 NC_001978.2 + 15994 0.68 0.261395
Target:  5'- cGUCGCGCCcguGUCGCCCuuGUCGcccuucGCGCc -3'
miRNA:   3'- -CAGUGCGG---CAGCGGGccCAGCu-----CGUG- -5'
8084 5' -61.6 NC_001978.2 + 19427 0.68 0.261395
Target:  5'- cGUCACGUCGgCGUCCgucGGGaCGuAGCGCu -3'
miRNA:   3'- -CAGUGCGGCaGCGGG---CCCaGC-UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 40776 0.68 0.261395
Target:  5'- -cCGCGuUCGgCGUCauugaGGGUCGAGCGCu -3'
miRNA:   3'- caGUGC-GGCaGCGGg----CCCAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 19015 0.68 0.248579
Target:  5'- -gCGCGuCCGgcuucagCGUgCCGGGUCGAGuCACc -3'
miRNA:   3'- caGUGC-GGCa------GCG-GGCCCAGCUC-GUG- -5'
8084 5' -61.6 NC_001978.2 + 11074 0.68 0.242368
Target:  5'- uUCGCGCCcaaUCGCgaaCGGGUCGGcguucgucuGCACg -3'
miRNA:   3'- cAGUGCGGc--AGCGg--GCCCAGCU---------CGUG- -5'
8084 5' -61.6 NC_001978.2 + 31484 0.68 0.236286
Target:  5'- -gCACGCUuUCGCgucCCGGGUUGcGGCGCu -3'
miRNA:   3'- caGUGCGGcAGCG---GGCCCAGC-UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 26303 0.68 0.230333
Target:  5'- gGUCACGCCGUCccacacgaaguaGCCCaGGcCGGaCGCg -3'
miRNA:   3'- -CAGUGCGGCAG------------CGGGcCCaGCUcGUG- -5'
8084 5' -61.6 NC_001978.2 + 35380 0.68 0.224507
Target:  5'- --aGCGCCGUCG-CUGGGUgGAcGUACu -3'
miRNA:   3'- cagUGCGGCAGCgGGCCCAgCU-CGUG- -5'
8084 5' -61.6 NC_001978.2 + 26073 0.68 0.224507
Target:  5'- aGUCGCGCacCGUaccggCGCCguucaGGuGUCGAGCACu -3'
miRNA:   3'- -CAGUGCG--GCA-----GCGGg----CC-CAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 17507 0.68 0.224507
Target:  5'- -aCACGCCGUCGCCC---UC-AGCGCu -3'
miRNA:   3'- caGUGCGGCAGCGGGcccAGcUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 35754 0.69 0.218807
Target:  5'- --aACGCCGUCGCCCaGcUCGAcCACu -3'
miRNA:   3'- cagUGCGGCAGCGGGcCcAGCUcGUG- -5'
8084 5' -61.6 NC_001978.2 + 20523 0.69 0.213231
Target:  5'- uUgACGCCGUC-CuuGaucaGGUCGGGCACg -3'
miRNA:   3'- cAgUGCGGCAGcGggC----CCAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 13284 0.69 0.207777
Target:  5'- aUUACGCCGggcgggUGCUccaugaCGGGUaCGAGCGCa -3'
miRNA:   3'- cAGUGCGGCa-----GCGG------GCCCA-GCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 24835 0.69 0.199302
Target:  5'- -gUAUGCCGUCGCCCgacgcuucugacucaGGGUguGGCGCu -3'
miRNA:   3'- caGUGCGGCAGCGGG---------------CCCAgcUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.