miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8087 3' -58.4 NC_001978.2 + 32181 0.66 0.490674
Target:  5'- aGCUgacgcGCCUgAGCCGGGGUCaucacggcacgGuCGgCCg -3'
miRNA:   3'- -CGAau---CGGAgUCGGCCUCAG-----------C-GCgGG- -5'
8087 3' -58.4 NC_001978.2 + 27099 0.66 0.490674
Target:  5'- ---aAGCUUCGGgCGGAGUCG-GCg- -3'
miRNA:   3'- cgaaUCGGAGUCgGCCUCAGCgCGgg -5'
8087 3' -58.4 NC_001978.2 + 26189 0.66 0.490674
Target:  5'- cGCUugUGGCauggacugaCGGCCGGAucaaGUaCGCGUCCg -3'
miRNA:   3'- -CGA--AUCGga-------GUCGGCCU----CA-GCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 38171 0.66 0.490674
Target:  5'- gGCgcGGCUUCcccguGCCGGAGcaauCGCCCu -3'
miRNA:   3'- -CGaaUCGGAGu----CGGCCUCagc-GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 26051 0.66 0.480464
Target:  5'- gGCgucguGCagUCGGCUGGggaacuugcccgGGUCGCGCUCa -3'
miRNA:   3'- -CGaau--CGg-AGUCGGCC------------UCAGCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 35561 0.66 0.480464
Target:  5'- ----cGCCggaugUCgAGCCGGAGaCGgCGCCCc -3'
miRNA:   3'- cgaauCGG-----AG-UCGGCCUCaGC-GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 30518 0.66 0.47036
Target:  5'- uGCUUAGCgugUCGGCaagGGAaccGUCGgCGUCCg -3'
miRNA:   3'- -CGAAUCGg--AGUCGg--CCU---CAGC-GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 30425 0.66 0.460364
Target:  5'- ---cGGCUUCGGCgCGuuccuugcuGAGUCGCuuGCCCu -3'
miRNA:   3'- cgaaUCGGAGUCG-GC---------CUCAGCG--CGGG- -5'
8087 3' -58.4 NC_001978.2 + 28294 0.66 0.460364
Target:  5'- --gUAGCgUCGGCCGGAugcucaggCGCGCg- -3'
miRNA:   3'- cgaAUCGgAGUCGGCCUca------GCGCGgg -5'
8087 3' -58.4 NC_001978.2 + 21580 0.66 0.44461
Target:  5'- cGCguacAGCCUCAGCgcaCggggugcacgucggcGGAGUCGaGCCCc -3'
miRNA:   3'- -CGaa--UCGGAGUCG---G---------------CCUCAGCgCGGG- -5'
8087 3' -58.4 NC_001978.2 + 20387 0.66 0.440719
Target:  5'- gGCgaaGGCCgaAGUC-GAGUCGCGCCg -3'
miRNA:   3'- -CGaa-UCGGagUCGGcCUCAGCGCGGg -5'
8087 3' -58.4 NC_001978.2 + 13645 0.67 0.431077
Target:  5'- ----uGCgUCAGCgcgaaCGGAGUCGaCGCCg -3'
miRNA:   3'- cgaauCGgAGUCG-----GCCUCAGC-GCGGg -5'
8087 3' -58.4 NC_001978.2 + 18163 0.67 0.421559
Target:  5'- ---cAGCgUCGgcGCCGGAGUaacCGCGCUUg -3'
miRNA:   3'- cgaaUCGgAGU--CGGCCUCA---GCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 27144 0.67 0.412168
Target:  5'- aGCUUccGGUCaaGGUCGuAGUCGCGCUCu -3'
miRNA:   3'- -CGAA--UCGGagUCGGCcUCAGCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 12844 0.67 0.393782
Target:  5'- gGCgggUGGCgUCGGCCGua-UCGCGCUUa -3'
miRNA:   3'- -CGa--AUCGgAGUCGGCcucAGCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 23231 0.67 0.393782
Target:  5'- cGCUcauucGUCUCgcuguAGCCGGAGUgGaaaCGCCCa -3'
miRNA:   3'- -CGAau---CGGAG-----UCGGCCUCAgC---GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 7550 0.67 0.384791
Target:  5'- ----cGCCUCAGCgGGAuagGUCG-GCUCg -3'
miRNA:   3'- cgaauCGGAGUCGgCCU---CAGCgCGGG- -5'
8087 3' -58.4 NC_001978.2 + 26052 0.68 0.375936
Target:  5'- gGCggAGCaccguaaGGCCGaAGUCGCGCaCCg -3'
miRNA:   3'- -CGaaUCGgag----UCGGCcUCAGCGCG-GG- -5'
8087 3' -58.4 NC_001978.2 + 11390 0.68 0.36722
Target:  5'- gGCUUccgugaaCUCAGCgCGG--UCGCGCCCg -3'
miRNA:   3'- -CGAAucg----GAGUCG-GCCucAGCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 4968 0.68 0.358644
Target:  5'- cGCgc-GCCUCaaAGuuGGcgcucagaguGGUCGCGUCCa -3'
miRNA:   3'- -CGaauCGGAG--UCggCC----------UCAGCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.