miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8087 3' -58.4 NC_001978.2 + 30701 0.68 0.350209
Target:  5'- aGCgccGCaacgUCcGCCGGAGUCGUcucGCCCu -3'
miRNA:   3'- -CGaauCGg---AGuCGGCCUCAGCG---CGGG- -5'
8087 3' -58.4 NC_001978.2 + 28636 0.68 0.341916
Target:  5'- cGCUUcgcucgaaggacGGCUUCGGCCaacGGGUuaggcucaCGCGCCCc -3'
miRNA:   3'- -CGAA------------UCGGAGUCGGc--CUCA--------GCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 6406 0.68 0.341916
Target:  5'- aGCUU-GCCcaGGCUGGGGgaaauugGCGCCCg -3'
miRNA:   3'- -CGAAuCGGagUCGGCCUCag-----CGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 1072 0.68 0.341916
Target:  5'- uGCUgggaAGCCUU--CCGG-GUCGuCGCCCc -3'
miRNA:   3'- -CGAa---UCGGAGucGGCCuCAGC-GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 5704 0.68 0.341916
Target:  5'- gGCgucAGCCUCAccgaaggcagcGuuGGcgccGGUCGCGUCCg -3'
miRNA:   3'- -CGaa-UCGGAGU-----------CggCC----UCAGCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 25057 0.68 0.341916
Target:  5'- ---gGGCUUCGGaCCGaaGGUCaGCGCCCa -3'
miRNA:   3'- cgaaUCGGAGUC-GGCc-UCAG-CGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 27161 0.69 0.333766
Target:  5'- uGCgaaUGGCCUgGGCgaccCGGAGUCGauuaGCaCCg -3'
miRNA:   3'- -CGa--AUCGGAgUCG----GCCUCAGCg---CG-GG- -5'
8087 3' -58.4 NC_001978.2 + 34481 0.69 0.3026
Target:  5'- ----cGCUUCGGCCGuGAuucGcCGCGCCCc -3'
miRNA:   3'- cgaauCGGAGUCGGC-CU---CaGCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 6736 0.69 0.3026
Target:  5'- uGgUUGGCUUCGcGCCGGAG-CGCauaGCCa -3'
miRNA:   3'- -CgAAUCGGAGU-CGGCCUCaGCG---CGGg -5'
8087 3' -58.4 NC_001978.2 + 36781 0.69 0.295167
Target:  5'- cGCcggAGCCUgAGCCGGAGcC-UGCCg -3'
miRNA:   3'- -CGaa-UCGGAgUCGGCCUCaGcGCGGg -5'
8087 3' -58.4 NC_001978.2 + 22978 0.69 0.295167
Target:  5'- -aUUGGUC-CGGCCGGAcccuaGUCGCGCg- -3'
miRNA:   3'- cgAAUCGGaGUCGGCCU-----CAGCGCGgg -5'
8087 3' -58.4 NC_001978.2 + 18659 0.7 0.287877
Target:  5'- cGCUgauauCCguaacgCuGCCGGAGaCGCGCCCc -3'
miRNA:   3'- -CGAauc--GGa-----GuCGGCCUCaGCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 11481 0.7 0.273723
Target:  5'- ---aGGCCguUCGGUCGGAcGcUGCGCCCg -3'
miRNA:   3'- cgaaUCGG--AGUCGGCCU-CaGCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 2017 0.7 0.273723
Target:  5'- ---cAGCCUCA-CCGGAGUUGaccCGCUCa -3'
miRNA:   3'- cgaaUCGGAGUcGGCCUCAGC---GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 17633 0.7 0.253546
Target:  5'- cGCUgAGCCgu--CCGGAGcCGuCGCCCg -3'
miRNA:   3'- -CGAaUCGGagucGGCCUCaGC-GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 36710 0.71 0.247098
Target:  5'- gGCggAGCCUgAgcccgucacggaGCCGGAGaCGgCGCCCc -3'
miRNA:   3'- -CGaaUCGGAgU------------CGGCCUCaGC-GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 19468 0.71 0.247098
Target:  5'- cGCUccGCCUCAGCggcaaGGAucuUCGCGCaCCg -3'
miRNA:   3'- -CGAauCGGAGUCGg----CCUc--AGCGCG-GG- -5'
8087 3' -58.4 NC_001978.2 + 25497 0.71 0.234608
Target:  5'- ----cGCCUCAGCCuGGGcgacGUCGaGCCCg -3'
miRNA:   3'- cgaauCGGAGUCGG-CCU----CAGCgCGGG- -5'
8087 3' -58.4 NC_001978.2 + 36598 0.71 0.216872
Target:  5'- cGCUUGugauGCUUCucGCCGaAGUCGgGCCCg -3'
miRNA:   3'- -CGAAU----CGGAGu-CGGCcUCAGCgCGGG- -5'
8087 3' -58.4 NC_001978.2 + 31612 0.72 0.211221
Target:  5'- ---gGGCCggacgggaAGCCGGAGUCaaGCGCCg -3'
miRNA:   3'- cgaaUCGGag------UCGGCCUCAG--CGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.