Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8087 | 3' | -58.4 | NC_001978.2 | + | 1072 | 0.68 | 0.341916 |
Target: 5'- uGCUgggaAGCCUU--CCGG-GUCGuCGCCCc -3' miRNA: 3'- -CGAa---UCGGAGucGGCCuCAGC-GCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 5704 | 0.68 | 0.341916 |
Target: 5'- gGCgucAGCCUCAccgaaggcagcGuuGGcgccGGUCGCGUCCg -3' miRNA: 3'- -CGaa-UCGGAGU-----------CggCC----UCAGCGCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 25057 | 0.68 | 0.341916 |
Target: 5'- ---gGGCUUCGGaCCGaaGGUCaGCGCCCa -3' miRNA: 3'- cgaaUCGGAGUC-GGCc-UCAG-CGCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 6736 | 0.69 | 0.3026 |
Target: 5'- uGgUUGGCUUCGcGCCGGAG-CGCauaGCCa -3' miRNA: 3'- -CgAAUCGGAGU-CGGCCUCaGCG---CGGg -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 22978 | 0.69 | 0.295167 |
Target: 5'- -aUUGGUC-CGGCCGGAcccuaGUCGCGCg- -3' miRNA: 3'- cgAAUCGGaGUCGGCCU-----CAGCGCGgg -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 18659 | 0.7 | 0.287877 |
Target: 5'- cGCUgauauCCguaacgCuGCCGGAGaCGCGCCCc -3' miRNA: 3'- -CGAauc--GGa-----GuCGGCCUCaGCGCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 11481 | 0.7 | 0.273723 |
Target: 5'- ---aGGCCguUCGGUCGGAcGcUGCGCCCg -3' miRNA: 3'- cgaaUCGG--AGUCGGCCU-CaGCGCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 2017 | 0.7 | 0.273723 |
Target: 5'- ---cAGCCUCA-CCGGAGUUGaccCGCUCa -3' miRNA: 3'- cgaaUCGGAGUcGGCCUCAGC---GCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 4968 | 0.68 | 0.358644 |
Target: 5'- cGCgc-GCCUCaaAGuuGGcgcucagaguGGUCGCGUCCa -3' miRNA: 3'- -CGaauCGGAG--UCggCC----------UCAGCGCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 11390 | 0.68 | 0.36722 |
Target: 5'- gGCUUccgugaaCUCAGCgCGG--UCGCGCCCg -3' miRNA: 3'- -CGAAucg----GAGUCG-GCCucAGCGCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 7550 | 0.67 | 0.384791 |
Target: 5'- ----cGCCUCAGCgGGAuagGUCG-GCUCg -3' miRNA: 3'- cgaauCGGAGUCGgCCU---CAGCgCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 26051 | 0.66 | 0.480464 |
Target: 5'- gGCgucguGCagUCGGCUGGggaacuugcccgGGUCGCGCUCa -3' miRNA: 3'- -CGaau--CGg-AGUCGGCC------------UCAGCGCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 30518 | 0.66 | 0.47036 |
Target: 5'- uGCUUAGCgugUCGGCaagGGAaccGUCGgCGUCCg -3' miRNA: 3'- -CGAAUCGg--AGUCGg--CCU---CAGC-GCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 30425 | 0.66 | 0.460364 |
Target: 5'- ---cGGCUUCGGCgCGuuccuugcuGAGUCGCuuGCCCu -3' miRNA: 3'- cgaaUCGGAGUCG-GC---------CUCAGCG--CGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 28294 | 0.66 | 0.460364 |
Target: 5'- --gUAGCgUCGGCCGGAugcucaggCGCGCg- -3' miRNA: 3'- cgaAUCGgAGUCGGCCUca------GCGCGgg -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 21580 | 0.66 | 0.44461 |
Target: 5'- cGCguacAGCCUCAGCgcaCggggugcacgucggcGGAGUCGaGCCCc -3' miRNA: 3'- -CGaa--UCGGAGUCG---G---------------CCUCAGCgCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 13645 | 0.67 | 0.431077 |
Target: 5'- ----uGCgUCAGCgcgaaCGGAGUCGaCGCCg -3' miRNA: 3'- cgaauCGgAGUCG-----GCCUCAGC-GCGGg -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 18163 | 0.67 | 0.421559 |
Target: 5'- ---cAGCgUCGgcGCCGGAGUaacCGCGCUUg -3' miRNA: 3'- cgaaUCGgAGU--CGGCCUCA---GCGCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 27144 | 0.67 | 0.412168 |
Target: 5'- aGCUUccGGUCaaGGUCGuAGUCGCGCUCu -3' miRNA: 3'- -CGAA--UCGGagUCGGCcUCAGCGCGGG- -5' |
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8087 | 3' | -58.4 | NC_001978.2 | + | 23231 | 0.67 | 0.393782 |
Target: 5'- cGCUcauucGUCUCgcuguAGCCGGAGUgGaaaCGCCCa -3' miRNA: 3'- -CGAau---CGGAG-----UCGGCCUCAgC---GCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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