miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8088 5' -48 NC_001978.2 + 9424 1.08 0.004354
Target:  5'- cGCCACGAACGAGAAUGUCAAACGCUUc -3'
miRNA:   3'- -CGGUGCUUGCUCUUACAGUUUGCGAA- -5'
8088 5' -48 NC_001978.2 + 15185 0.75 0.514144
Target:  5'- aCCugGGuUGGGAcgGUCGAGCGCUg -3'
miRNA:   3'- cGGugCUuGCUCUuaCAGUUUGCGAa -5'
8088 5' -48 NC_001978.2 + 27263 0.75 0.537017
Target:  5'- uGCCgACGAcuccGCGAuuGUGUCGGGCGCUg -3'
miRNA:   3'- -CGG-UGCU----UGCUcuUACAGUUUGCGAa -5'
8088 5' -48 NC_001978.2 + 40774 0.72 0.678608
Target:  5'- uGCCGCGuucgGCGucauuGAggGUCGAGCGCUc -3'
miRNA:   3'- -CGGUGCu---UGCu----CUuaCAGUUUGCGAa -5'
8088 5' -48 NC_001978.2 + 38444 0.71 0.770114
Target:  5'- -gCGCGAgcGCGAGAAU-UCGAGCGCa- -3'
miRNA:   3'- cgGUGCU--UGCUCUUAcAGUUUGCGaa -5'
8088 5' -48 NC_001978.2 + 6551 0.69 0.851053
Target:  5'- uGCCucacaugaagAUGAACGGGA--GUCGGACGCg- -3'
miRNA:   3'- -CGG----------UGCUUGCUCUuaCAGUUUGCGaa -5'
8088 5' -48 NC_001978.2 + 13310 0.69 0.860087
Target:  5'- gGgUACGAGCGcaAGAcgGaUCAAGCGCUUc -3'
miRNA:   3'- -CgGUGCUUGC--UCUuaC-AGUUUGCGAA- -5'
8088 5' -48 NC_001978.2 + 12308 0.69 0.872266
Target:  5'- aGCCGCGcAACGAucaaguccuuacgcgGAuucGUGUUGGACGCUg -3'
miRNA:   3'- -CGGUGC-UUGCU---------------CU---UACAGUUUGCGAa -5'
8088 5' -48 NC_001978.2 + 3911 0.68 0.877313
Target:  5'- aGCCACGGGCGAaGAcugaacAUGgUGAACGCa- -3'
miRNA:   3'- -CGGUGCUUGCU-CU------UACaGUUUGCGaa -5'
8088 5' -48 NC_001978.2 + 785 0.68 0.885487
Target:  5'- cGCCAacaaGGGCGAGAcgGUCAAG-GUUc -3'
miRNA:   3'- -CGGUg---CUUGCUCUuaCAGUUUgCGAa -5'
8088 5' -48 NC_001978.2 + 1381 0.67 0.927995
Target:  5'- cGUCGCGucAGCGGGAAUGUgccGCGCa- -3'
miRNA:   3'- -CGGUGC--UUGCUCUUACAguuUGCGaa -5'
8088 5' -48 NC_001978.2 + 31611 0.67 0.927995
Target:  5'- gGCC--GGACGGGAAgccggaGUCAAGCGCc- -3'
miRNA:   3'- -CGGugCUUGCUCUUa-----CAGUUUGCGaa -5'
8088 5' -48 NC_001978.2 + 40215 0.67 0.931612
Target:  5'- aGCgGCGuAGCGAGAcacccgggaagccUGUUAGGCGCUg -3'
miRNA:   3'- -CGgUGC-UUGCUCUu------------ACAGUUUGCGAa -5'
8088 5' -48 NC_001978.2 + 20761 0.67 0.939601
Target:  5'- uGgCGCGAACGAGGGaGUUguGCGCc- -3'
miRNA:   3'- -CgGUGCUUGCUCUUaCAGuuUGCGaa -5'
8088 5' -48 NC_001978.2 + 17010 0.66 0.944923
Target:  5'- cGCCAUGAuCG-GAAUGUC-AugGUUg -3'
miRNA:   3'- -CGGUGCUuGCuCUUACAGuUugCGAa -5'
8088 5' -48 NC_001978.2 + 30943 0.66 0.955072
Target:  5'- cGCCAcCGAugccgaaggagugcuUGAGAAUGUC--GCGCUg -3'
miRNA:   3'- -CGGU-GCUu--------------GCUCUUACAGuuUGCGAa -5'
8088 5' -48 NC_001978.2 + 14550 0.66 0.961896
Target:  5'- uUCACGAagcGCGAGAAcGUCGcugccccugacgguGGCGCUc -3'
miRNA:   3'- cGGUGCU---UGCUCUUaCAGU--------------UUGCGAa -5'
8088 5' -48 NC_001978.2 + 27101 0.66 0.96309
Target:  5'- aGCgCACGAACG-GAAUGagcuUCAcgcGACGCc- -3'
miRNA:   3'- -CG-GUGCUUGCuCUUAC----AGU---UUGCGaa -5'
8088 5' -48 NC_001978.2 + 18244 0.66 0.96309
Target:  5'- cGCggaACGAACaGAGAGUGaUC-GACGCUc -3'
miRNA:   3'- -CGg--UGCUUG-CUCUUAC-AGuUUGCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.