Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8088 | 5' | -48 | NC_001978.2 | + | 785 | 0.68 | 0.885487 |
Target: 5'- cGCCAacaaGGGCGAGAcgGUCAAG-GUUc -3' miRNA: 3'- -CGGUg---CUUGCUCUuaCAGUUUgCGAa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 1381 | 0.67 | 0.927995 |
Target: 5'- cGUCGCGucAGCGGGAAUGUgccGCGCa- -3' miRNA: 3'- -CGGUGC--UUGCUCUUACAguuUGCGaa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 3911 | 0.68 | 0.877313 |
Target: 5'- aGCCACGGGCGAaGAcugaacAUGgUGAACGCa- -3' miRNA: 3'- -CGGUGCUUGCU-CU------UACaGUUUGCGaa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 6551 | 0.69 | 0.851053 |
Target: 5'- uGCCucacaugaagAUGAACGGGA--GUCGGACGCg- -3' miRNA: 3'- -CGG----------UGCUUGCUCUuaCAGUUUGCGaa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 9424 | 1.08 | 0.004354 |
Target: 5'- cGCCACGAACGAGAAUGUCAAACGCUUc -3' miRNA: 3'- -CGGUGCUUGCUCUUACAGUUUGCGAA- -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 12308 | 0.69 | 0.872266 |
Target: 5'- aGCCGCGcAACGAucaaguccuuacgcgGAuucGUGUUGGACGCUg -3' miRNA: 3'- -CGGUGC-UUGCU---------------CU---UACAGUUUGCGAa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 13310 | 0.69 | 0.860087 |
Target: 5'- gGgUACGAGCGcaAGAcgGaUCAAGCGCUUc -3' miRNA: 3'- -CgGUGCUUGC--UCUuaC-AGUUUGCGAA- -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 14550 | 0.66 | 0.961896 |
Target: 5'- uUCACGAagcGCGAGAAcGUCGcugccccugacgguGGCGCUc -3' miRNA: 3'- cGGUGCU---UGCUCUUaCAGU--------------UUGCGAa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 15185 | 0.75 | 0.514144 |
Target: 5'- aCCugGGuUGGGAcgGUCGAGCGCUg -3' miRNA: 3'- cGGugCUuGCUCUuaCAGUUUGCGAa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 17010 | 0.66 | 0.944923 |
Target: 5'- cGCCAUGAuCG-GAAUGUC-AugGUUg -3' miRNA: 3'- -CGGUGCUuGCuCUUACAGuUugCGAa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 18244 | 0.66 | 0.96309 |
Target: 5'- cGCggaACGAACaGAGAGUGaUC-GACGCUc -3' miRNA: 3'- -CGg--UGCUUG-CUCUUAC-AGuUUGCGAa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 20761 | 0.67 | 0.939601 |
Target: 5'- uGgCGCGAACGAGGGaGUUguGCGCc- -3' miRNA: 3'- -CgGUGCUUGCUCUUaCAGuuUGCGaa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 27101 | 0.66 | 0.96309 |
Target: 5'- aGCgCACGAACG-GAAUGagcuUCAcgcGACGCc- -3' miRNA: 3'- -CG-GUGCUUGCuCUUAC----AGU---UUGCGaa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 27263 | 0.75 | 0.537017 |
Target: 5'- uGCCgACGAcuccGCGAuuGUGUCGGGCGCUg -3' miRNA: 3'- -CGG-UGCU----UGCUcuUACAGUUUGCGAa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 30943 | 0.66 | 0.955072 |
Target: 5'- cGCCAcCGAugccgaaggagugcuUGAGAAUGUC--GCGCUg -3' miRNA: 3'- -CGGU-GCUu--------------GCUCUUACAGuuUGCGAa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 31611 | 0.67 | 0.927995 |
Target: 5'- gGCC--GGACGGGAAgccggaGUCAAGCGCc- -3' miRNA: 3'- -CGGugCUUGCUCUUa-----CAGUUUGCGaa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 38444 | 0.71 | 0.770114 |
Target: 5'- -gCGCGAgcGCGAGAAU-UCGAGCGCa- -3' miRNA: 3'- cgGUGCU--UGCUCUUAcAGUUUGCGaa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 40215 | 0.67 | 0.931612 |
Target: 5'- aGCgGCGuAGCGAGAcacccgggaagccUGUUAGGCGCUg -3' miRNA: 3'- -CGgUGC-UUGCUCUu------------ACAGUUUGCGAa -5' |
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8088 | 5' | -48 | NC_001978.2 | + | 40774 | 0.72 | 0.678608 |
Target: 5'- uGCCGCGuucgGCGucauuGAggGUCGAGCGCUc -3' miRNA: 3'- -CGGUGCu---UGCu----CUuaCAGUUUGCGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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