miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8089 3' -58.6 NC_001978.2 + 22879 0.67 0.419144
Target:  5'- gCGGGGacggCGGCGUUGUGGccGUGCCACaugCCa -3'
miRNA:   3'- -GUUCCa---GUCGCAGCGCU--CGCGGUG---GG- -5'
8089 3' -58.6 NC_001978.2 + 22735 0.67 0.428603
Target:  5'- ---cGUCGGCGUCGUGuuCGUCGCUg -3'
miRNA:   3'- guucCAGUCGCAGCGCucGCGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 22679 0.66 0.467653
Target:  5'- -cGGG-C-GCGUCGCuGAGUGCCGgUCa -3'
miRNA:   3'- guUCCaGuCGCAGCG-CUCGCGGUgGG- -5'
8089 3' -58.6 NC_001978.2 + 22105 0.69 0.292863
Target:  5'- -cAGGUCGGCGcgaaccuUCGUGuaccGGCgaGCCGCCCc -3'
miRNA:   3'- guUCCAGUCGC-------AGCGC----UCG--CGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 21982 0.67 0.391544
Target:  5'- aCAuGG-CAGCG-CGCGAccgcgaagGCGCCAUUCa -3'
miRNA:   3'- -GUuCCaGUCGCaGCGCU--------CGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 19769 0.66 0.487853
Target:  5'- ---cGUUGGCGUaGuCGAGCGCUucgGCCCa -3'
miRNA:   3'- guucCAGUCGCAgC-GCUCGCGG---UGGG- -5'
8089 3' -58.6 NC_001978.2 + 19643 0.68 0.365156
Target:  5'- aCAAGGUCAGCGaccCGCGcaaGGaCGCCuucgacaagGCUCg -3'
miRNA:   3'- -GUUCCAGUCGCa--GCGC---UC-GCGG---------UGGG- -5'
8089 3' -58.6 NC_001978.2 + 18678 0.7 0.279256
Target:  5'- -cGGGUCAGCGaaUGCGAcGCGCUgauAUCCg -3'
miRNA:   3'- guUCCAGUCGCa-GCGCU-CGCGG---UGGG- -5'
8089 3' -58.6 NC_001978.2 + 17592 0.66 0.487853
Target:  5'- -cGGGUCGGCGgagaCG-GaGCCGCCCg -3'
miRNA:   3'- guUCCAGUCGCagc-GCuCgCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 16923 0.69 0.323975
Target:  5'- -cAGG-CAGCGUC-CGAcGUGCUugCCa -3'
miRNA:   3'- guUCCaGUCGCAGcGCU-CGCGGugGG- -5'
8089 3' -58.6 NC_001978.2 + 16007 0.67 0.428603
Target:  5'- uCGA-GUCGGCGcccgUCGCGcccGUGUCGCCCu -3'
miRNA:   3'- -GUUcCAGUCGC----AGCGCu--CGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 15932 0.66 0.477701
Target:  5'- aCAAGGgcgacacgGGCG-CGaCGGGCGCCgACUCg -3'
miRNA:   3'- -GUUCCag------UCGCaGC-GCUCGCGG-UGGG- -5'
8089 3' -58.6 NC_001978.2 + 13896 0.79 0.059935
Target:  5'- aCAGGGUCAGCGUCGgaauggccaCGGGUGCgGCuCCg -3'
miRNA:   3'- -GUUCCAGUCGCAGC---------GCUCGCGgUG-GG- -5'
8089 3' -58.6 NC_001978.2 + 13283 0.78 0.075433
Target:  5'- gCAAGGUCGGcCGUCGUGguccacAGCaaGCCGCCCc -3'
miRNA:   3'- -GUUCCAGUC-GCAGCGC------UCG--CGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 13190 0.67 0.382611
Target:  5'- uCGGGGUCGGCaG-CGuCGAGCGgCAUUCc -3'
miRNA:   3'- -GUUCCAGUCG-CaGC-GCUCGCgGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 13108 0.68 0.365156
Target:  5'- -cGGG-CAaCGUCGCGAuaaCGUCACCCg -3'
miRNA:   3'- guUCCaGUcGCAGCGCUc--GCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 11691 0.67 0.409813
Target:  5'- --cGG-CAGCGUUGCG-GC-UCGCCCu -3'
miRNA:   3'- guuCCaGUCGCAGCGCuCGcGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 10887 0.67 0.400613
Target:  5'- -cGGGUgGacccGUGUUgGCGAGCGUgGCCCg -3'
miRNA:   3'- guUCCAgU----CGCAG-CGCUCGCGgUGGG- -5'
8089 3' -58.6 NC_001978.2 + 9571 1 0.001633
Target:  5'- aCAAGGUCAGCGUCGC-AGCGCCACCCu -3'
miRNA:   3'- -GUUCCAGUCGCAGCGcUCGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 8963 0.68 0.338392
Target:  5'- --uGGUCGGCGUCGCccauaaucgugaucuGAaugggucgagccacaGCGCC-CCCu -3'
miRNA:   3'- guuCCAGUCGCAGCG---------------CU---------------CGCGGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.