miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8089 3' -58.6 NC_001978.2 + 41224 0.67 0.391544
Target:  5'- gUAAGG-CAGUGggCGCGcacuGUGCUACCUg -3'
miRNA:   3'- -GUUCCaGUCGCa-GCGCu---CGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 40585 0.73 0.156415
Target:  5'- cUAAGGaaCGGCGU--CGAGCGCUACCCa -3'
miRNA:   3'- -GUUCCa-GUCGCAgcGCUCGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 39906 0.66 0.438187
Target:  5'- -cGGGUC--CGUCGUacGCGCCugCCg -3'
miRNA:   3'- guUCCAGucGCAGCGcuCGCGGugGG- -5'
8089 3' -58.6 NC_001978.2 + 38157 0.66 0.477701
Target:  5'- gAAGG-CAGUGg-GCGAGCcagucauacGCCGCCg -3'
miRNA:   3'- gUUCCaGUCGCagCGCUCG---------CGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 37816 0.66 0.457716
Target:  5'- aGGGGUCGcCGUCGuCGGgcagcGCGCaauaGCCCu -3'
miRNA:   3'- gUUCCAGUcGCAGC-GCU-----CGCGg---UGGG- -5'
8089 3' -58.6 NC_001978.2 + 36712 0.7 0.245225
Target:  5'- uCAGGGcuucccgcUCAGCGUCgGCaAGCGCCuucauguacacggGCCCg -3'
miRNA:   3'- -GUUCC--------AGUCGCAG-CGcUCGCGG-------------UGGG- -5'
8089 3' -58.6 NC_001978.2 + 36055 0.7 0.279256
Target:  5'- -cGGGUCGGCGgcaGUcuccgGGGUGUCGCCCc -3'
miRNA:   3'- guUCCAGUCGCag-CG-----CUCGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 34350 0.68 0.356637
Target:  5'- gCAGGGuUCGcGCGUCGUGuacAGCGUgGCuCCg -3'
miRNA:   3'- -GUUCC-AGU-CGCAGCGC---UCGCGgUG-GG- -5'
8089 3' -58.6 NC_001978.2 + 34168 0.66 0.487853
Target:  5'- -uGGGcaacUgAGCGcCGuCGAGUGCgCGCCCa -3'
miRNA:   3'- guUCC----AgUCGCaGC-GCUCGCG-GUGGG- -5'
8089 3' -58.6 NC_001978.2 + 34138 0.67 0.428603
Target:  5'- -cGGGUguGCGUcCGCcgGAGCG-UGCCCa -3'
miRNA:   3'- guUCCAguCGCA-GCG--CUCGCgGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 34103 0.69 0.286354
Target:  5'- -uGGGaacGCGUacaguccgCGCGAGuCGCCACCCa -3'
miRNA:   3'- guUCCaguCGCA--------GCGCUC-GCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 33641 0.66 0.442055
Target:  5'- cCGGGGUCacacccgacggucacGGCGcCGacaaGGGCGaCACCCg -3'
miRNA:   3'- -GUUCCAG---------------UCGCaGCg---CUCGCgGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 30134 0.68 0.373815
Target:  5'- ---aGUCGGCaaaGCGuGCGCCACCa -3'
miRNA:   3'- guucCAGUCGcagCGCuCGCGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 29453 0.71 0.221582
Target:  5'- -uAGGUCAGCGUCgGCGAcgacGgGCaCGCCg -3'
miRNA:   3'- guUCCAGUCGCAG-CGCU----CgCG-GUGGg -5'
8089 3' -58.6 NC_001978.2 + 27889 0.68 0.356637
Target:  5'- ---aGUCGGCGgcuUCgGCGaAGCGuCCGCCCa -3'
miRNA:   3'- guucCAGUCGC---AG-CGC-UCGC-GGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 27431 0.67 0.409813
Target:  5'- ---uGUCGGCGugaaguUCGCuGAcGCGCCugCCg -3'
miRNA:   3'- guucCAGUCGC------AGCG-CU-CGCGGugGG- -5'
8089 3' -58.6 NC_001978.2 + 26191 0.66 0.487853
Target:  5'- aCAAGGUCGcccaggauGCG-CGC-AGCGUCggcGCCCu -3'
miRNA:   3'- -GUUCCAGU--------CGCaGCGcUCGCGG---UGGG- -5'
8089 3' -58.6 NC_001978.2 + 25045 0.67 0.409813
Target:  5'- gAAGGUCAGCGcccauUCgGCaAGCGUCuucgcGCCCu -3'
miRNA:   3'- gUUCCAGUCGC-----AG-CGcUCGCGG-----UGGG- -5'
8089 3' -58.6 NC_001978.2 + 24921 0.66 0.447893
Target:  5'- -uGGGUCGccuuuGCGUCGCaguaGGCGCaccgguaGCCCc -3'
miRNA:   3'- guUCCAGU-----CGCAGCGc---UCGCGg------UGGG- -5'
8089 3' -58.6 NC_001978.2 + 23467 0.68 0.356637
Target:  5'- --cGGUCAGCcgUGCGGGUGCCcgaaGCUCu -3'
miRNA:   3'- guuCCAGUCGcaGCGCUCGCGG----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.