Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8090 | 3' | -54.7 | NC_001978.2 | + | 18099 | 0.69 | 0.4523 |
Target: 5'- cGUCCAcUGGGCACCCGGaCCG-GACCGg -3' miRNA: 3'- -CGGGU-AUUCGUGGGUUgGGCgUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 18613 | 0.66 | 0.638621 |
Target: 5'- uGCCCGacUGAGCGC---GCCCGauaaGACCGa -3' miRNA: 3'- -CGGGU--AUUCGUGgguUGGGCg---UUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 19747 | 0.66 | 0.649978 |
Target: 5'- gGCCCAguccauGCCCAGCgCGCgAGCCu -3' miRNA: 3'- -CGGGUauucg-UGGGUUGgGCG-UUGGu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 19862 | 0.66 | 0.6159 |
Target: 5'- uGCgCAUuGGCGCCguGCCgGgGGCCGa -3' miRNA: 3'- -CGgGUAuUCGUGGguUGGgCgUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 21542 | 0.68 | 0.504691 |
Target: 5'- cGCCU--GAGCGCCCGucUCCGCccCCAa -3' miRNA: 3'- -CGGGuaUUCGUGGGUu-GGGCGuuGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 23800 | 0.66 | 0.6159 |
Target: 5'- uGCCgacuaGUGgcAGCGCUCGACCCgGCGucGCCGg -3' miRNA: 3'- -CGGg----UAU--UCGUGGGUUGGG-CGU--UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 25505 | 0.68 | 0.548407 |
Target: 5'- aGCCCc--AGCGCCuCAGCCUggGCGACg- -3' miRNA: 3'- -CGGGuauUCGUGG-GUUGGG--CGUUGgu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 25706 | 0.68 | 0.537354 |
Target: 5'- -gCCAUAcGGCGCCCAGCgCUGCccguCCGg -3' miRNA: 3'- cgGGUAU-UCGUGGGUUG-GGCGuu--GGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 25869 | 0.67 | 0.563998 |
Target: 5'- aGCCCuucagaccuuCGgCCAGCuCCGCGACCAa -3' miRNA: 3'- -CGGGuauuc-----GUgGGUUG-GGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 28053 | 0.66 | 0.6159 |
Target: 5'- aCCCGUcGGCGCCgGACaCUcaggGCGACCu -3' miRNA: 3'- cGGGUAuUCGUGGgUUG-GG----CGUUGGu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 29198 | 0.66 | 0.654517 |
Target: 5'- aCCCGUGacggacacagugacaAGC-CCCGugCCGCGcgcuucacgcuGCCAa -3' miRNA: 3'- cGGGUAU---------------UCGuGGGUugGGCGU-----------UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 30372 | 0.67 | 0.581955 |
Target: 5'- cGCgCcgAAGcCGCCCGGCUCGCGuggcaggguGCCGu -3' miRNA: 3'- -CGgGuaUUC-GUGGGUUGGGCGU---------UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 30847 | 0.66 | 0.649978 |
Target: 5'- aGUCCAUGGGCGCCacuCagCGCGACa- -3' miRNA: 3'- -CGGGUAUUCGUGGguuGg-GCGUUGgu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 30981 | 0.68 | 0.536253 |
Target: 5'- uUCCAUGucGCACCCGucaccguGCCCGUAgucggucacGCCAc -3' miRNA: 3'- cGGGUAUu-CGUGGGU-------UGGGCGU---------UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 31401 | 0.71 | 0.348577 |
Target: 5'- aGCUCAgcggaaGAGCGCCgCAACCCGgGACgCGa -3' miRNA: 3'- -CGGGUa-----UUCGUGG-GUUGGGCgUUG-GU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 33055 | 0.75 | 0.200718 |
Target: 5'- cGCCCGUGcGCuacuGCCCAACgCCGC-GCCGg -3' miRNA: 3'- -CGGGUAUuCG----UGGGUUG-GGCGuUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 33206 | 0.67 | 0.55953 |
Target: 5'- -gCCGUA-GCGCCCAACuCCGUucaggacauGCCGa -3' miRNA: 3'- cgGGUAUuCGUGGGUUG-GGCGu--------UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 33235 | 0.66 | 0.6159 |
Target: 5'- -----cGAGCACCCGACCgGCGAacucCCGa -3' miRNA: 3'- cggguaUUCGUGGGUUGGgCGUU----GGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 33504 | 0.67 | 0.604556 |
Target: 5'- gGCUCAgc-GCGCggucuuucuUCGGCCCGUAGCCGu -3' miRNA: 3'- -CGGGUauuCGUG---------GGUUGGGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 34180 | 0.66 | 0.649978 |
Target: 5'- cGCCgucgaGUGcGCGCCCAACUC-CGACUAu -3' miRNA: 3'- -CGGg----UAUuCGUGGGUUGGGcGUUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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