miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8090 3' -54.7 NC_001978.2 + 210 0.72 0.329145
Target:  5'- cCCCGUcguguacgagggucGAGCGCCCcguguGCCCGCGcACCu -3'
miRNA:   3'- cGGGUA--------------UUCGUGGGu----UGGGCGU-UGGu -5'
8090 3' -54.7 NC_001978.2 + 369 0.7 0.432185
Target:  5'- gGUCCGUGucgggggaguaGGCGCCCAuACCgGCuuGCCAc -3'
miRNA:   3'- -CGGGUAU-----------UCGUGGGU-UGGgCGu-UGGU- -5'
8090 3' -54.7 NC_001978.2 + 732 0.67 0.609091
Target:  5'- cGCCCuuguuggcGUAGGCGCCgAaggugaagccgacgaGCCgGUAACCGu -3'
miRNA:   3'- -CGGG--------UAUUCGUGGgU---------------UGGgCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 805 0.69 0.472915
Target:  5'- cGCCCAggcgccgGAGCACUCGACCCauuCGgacACCu -3'
miRNA:   3'- -CGGGUa------UUCGUGGGUUGGGc--GU---UGGu -5'
8090 3' -54.7 NC_001978.2 + 1220 0.65 0.669239
Target:  5'- aGCCCcgAAGaugaacgccaacgcCAcCCCGACCCGguACUu -3'
miRNA:   3'- -CGGGuaUUC--------------GU-GGGUUGGGCguUGGu -5'
8090 3' -54.7 NC_001978.2 + 3227 0.67 0.569595
Target:  5'- gGCCCAUAc-CGCCCGGCUCaGCGuucggauagucgaGCCAu -3'
miRNA:   3'- -CGGGUAUucGUGGGUUGGG-CGU-------------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 5433 0.77 0.14743
Target:  5'- uCCCGgcGGuCGCCCGACCCGUGAUCAc -3'
miRNA:   3'- cGGGUauUC-GUGGGUUGGGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 6410 0.71 0.376039
Target:  5'- uGCCCAggcugggggaaauuGGCGCCCGACgUCGCuGCCu -3'
miRNA:   3'- -CGGGUau------------UCGUGGGUUG-GGCGuUGGu -5'
8090 3' -54.7 NC_001978.2 + 7885 0.67 0.567354
Target:  5'- uUCCGUGuGCucgACCCGggcgacggcgugacGCCCGCAAUCAa -3'
miRNA:   3'- cGGGUAUuCG---UGGGU--------------UGGGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 9162 0.67 0.604556
Target:  5'- aCCCA--GGCGCUUAGCCU-CAGCCGg -3'
miRNA:   3'- cGGGUauUCGUGGGUUGGGcGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 10314 1.11 0.000542
Target:  5'- cGCCCAUAAGCACCCAACCCGCAACCAc -3'
miRNA:   3'- -CGGGUAUUCGUGGGUUGGGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 11204 0.67 0.55953
Target:  5'- aCCCAUGacaAGCcCCCGauACUCGCAuguCCAg -3'
miRNA:   3'- cGGGUAU---UCGuGGGU--UGGGCGUu--GGU- -5'
8090 3' -54.7 NC_001978.2 + 12208 0.66 0.6159
Target:  5'- uGCCCccgAUAAGgACCguGCcggagccgaCCGCAACCGu -3'
miRNA:   3'- -CGGG---UAUUCgUGGguUG---------GGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 12508 0.7 0.384281
Target:  5'- uCCCGUAAGcCGCCUGAUCCGUguacuGACCc -3'
miRNA:   3'- cGGGUAUUC-GUGGGUUGGGCG-----UUGGu -5'
8090 3' -54.7 NC_001978.2 + 13354 0.69 0.462547
Target:  5'- aCCCGUcaugGAGCACCCGcCCgGCGuaauagcuguGCCAc -3'
miRNA:   3'- cGGGUA----UUCGUGGGUuGGgCGU----------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 15233 0.68 0.526379
Target:  5'- aCCCAggUAAGUACCCGugACCCGUAc--- -3'
miRNA:   3'- cGGGU--AUUCGUGGGU--UGGGCGUuggu -5'
8090 3' -54.7 NC_001978.2 + 15998 0.67 0.570716
Target:  5'- cGCCCGUc-GCGCCCGugUCGCccuugucGCCc -3'
miRNA:   3'- -CGGGUAuuCGUGGGUugGGCGu------UGGu -5'
8090 3' -54.7 NC_001978.2 + 16230 0.72 0.291961
Target:  5'- aGCCCGUcGGUGCCCAGCgUgGCAacGCCGg -3'
miRNA:   3'- -CGGGUAuUCGUGGGUUG-GgCGU--UGGU- -5'
8090 3' -54.7 NC_001978.2 + 16456 0.66 0.661318
Target:  5'- aCCCGguugcgAAGUAUCUGACuCCGCAGCg- -3'
miRNA:   3'- cGGGUa-----UUCGUGGGUUG-GGCGUUGgu -5'
8090 3' -54.7 NC_001978.2 + 17756 0.67 0.55953
Target:  5'- -aCC-UGGGCGCCaCGugcCCCGUAGCCGu -3'
miRNA:   3'- cgGGuAUUCGUGG-GUu--GGGCGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.