miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8090 3' -54.7 NC_001978.2 + 10314 1.11 0.000542
Target:  5'- cGCCCAUAAGCACCCAACCCGCAACCAc -3'
miRNA:   3'- -CGGGUAUUCGUGGGUUGGGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 5433 0.77 0.14743
Target:  5'- uCCCGgcGGuCGCCCGACCCGUGAUCAc -3'
miRNA:   3'- cGGGUauUC-GUGGGUUGGGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 33055 0.75 0.200718
Target:  5'- cGCCCGUGcGCuacuGCCCAACgCCGC-GCCGg -3'
miRNA:   3'- -CGGGUAUuCG----UGGGUUG-GGCGuUGGU- -5'
8090 3' -54.7 NC_001978.2 + 35274 0.73 0.255419
Target:  5'- cGCCCGUGuccuuccGGCGCCCGaugauccugaACCCGUcguACCGg -3'
miRNA:   3'- -CGGGUAU-------UCGUGGGU----------UGGGCGu--UGGU- -5'
8090 3' -54.7 NC_001978.2 + 16230 0.72 0.291961
Target:  5'- aGCCCGUcGGUGCCCAGCgUgGCAacGCCGg -3'
miRNA:   3'- -CGGGUAuUCGUGGGUUG-GgCGU--UGGU- -5'
8090 3' -54.7 NC_001978.2 + 210 0.72 0.329145
Target:  5'- cCCCGUcguguacgagggucGAGCGCCCcguguGCCCGCGcACCu -3'
miRNA:   3'- cGGGUA--------------UUCGUGGGu----UGGGCGU-UGGu -5'
8090 3' -54.7 NC_001978.2 + 31401 0.71 0.348577
Target:  5'- aGCUCAgcggaaGAGCGCCgCAACCCGgGACgCGa -3'
miRNA:   3'- -CGGGUa-----UUCGUGG-GUUGGGCgUUG-GU- -5'
8090 3' -54.7 NC_001978.2 + 36446 0.71 0.366129
Target:  5'- aGCCC---AGCACCCAGCCgG--ACCAu -3'
miRNA:   3'- -CGGGuauUCGUGGGUUGGgCguUGGU- -5'
8090 3' -54.7 NC_001978.2 + 6410 0.71 0.376039
Target:  5'- uGCCCAggcugggggaaauuGGCGCCCGACgUCGCuGCCu -3'
miRNA:   3'- -CGGGUau------------UCGUGGGUUG-GGCGuUGGu -5'
8090 3' -54.7 NC_001978.2 + 12508 0.7 0.384281
Target:  5'- uCCCGUAAGcCGCCUGAUCCGUguacuGACCc -3'
miRNA:   3'- cGGGUAUUC-GUGGGUUGGGCG-----UUGGu -5'
8090 3' -54.7 NC_001978.2 + 35643 0.7 0.393577
Target:  5'- gGCUUGUAcAGCGCCCAGCUCGaccccgaaGACCGg -3'
miRNA:   3'- -CGGGUAU-UCGUGGGUUGGGCg-------UUGGU- -5'
8090 3' -54.7 NC_001978.2 + 36665 0.7 0.406835
Target:  5'- aGCCC-UGAGCGCCCcugagccggucgcggAACCUG-AGCCGg -3'
miRNA:   3'- -CGGGuAUUCGUGGG---------------UUGGGCgUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 369 0.7 0.432185
Target:  5'- gGUCCGUGucgggggaguaGGCGCCCAuACCgGCuuGCCAc -3'
miRNA:   3'- -CGGGUAU-----------UCGUGGGU-UGGgCGu-UGGU- -5'
8090 3' -54.7 NC_001978.2 + 18099 0.69 0.4523
Target:  5'- cGUCCAcUGGGCACCCGGaCCG-GACCGg -3'
miRNA:   3'- -CGGGU-AUUCGUGGGUUgGGCgUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 13354 0.69 0.462547
Target:  5'- aCCCGUcaugGAGCACCCGcCCgGCGuaauagcuguGCCAc -3'
miRNA:   3'- cGGGUA----UUCGUGGGUuGGgCGU----------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 805 0.69 0.472915
Target:  5'- cGCCCAggcgccgGAGCACUCGACCCauuCGgacACCu -3'
miRNA:   3'- -CGGGUa------UUCGUGGGUUGGGc--GU---UGGu -5'
8090 3' -54.7 NC_001978.2 + 39206 0.69 0.472915
Target:  5'- -aCCGcuucAAGCGCCUggGACCCGgCAACCGu -3'
miRNA:   3'- cgGGUa---UUCGUGGG--UUGGGC-GUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 21542 0.68 0.504691
Target:  5'- cGCCU--GAGCGCCCGucUCCGCccCCAa -3'
miRNA:   3'- -CGGGuaUUCGUGGGUu-GGGCGuuGGU- -5'
8090 3' -54.7 NC_001978.2 + 15233 0.68 0.526379
Target:  5'- aCCCAggUAAGUACCCGugACCCGUAc--- -3'
miRNA:   3'- cGGGU--AUUCGUGGGU--UGGGCGUuggu -5'
8090 3' -54.7 NC_001978.2 + 30981 0.68 0.536253
Target:  5'- uUCCAUGucGCACCCGucaccguGCCCGUAgucggucacGCCAc -3'
miRNA:   3'- cGGGUAUu-CGUGGGU-------UGGGCGU---------UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.