miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8090 3' -54.7 NC_001978.2 + 1220 0.65 0.669239
Target:  5'- aGCCCcgAAGaugaacgccaacgcCAcCCCGACCCGguACUu -3'
miRNA:   3'- -CGGGuaUUC--------------GU-GGGUUGGGCguUGGu -5'
8090 3' -54.7 NC_001978.2 + 34180 0.66 0.649978
Target:  5'- cGCCgucgaGUGcGCGCCCAACUC-CGACUAu -3'
miRNA:   3'- -CGGg----UAUuCGUGGGUUGGGcGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 30847 0.66 0.649978
Target:  5'- aGUCCAUGGGCGCCacuCagCGCGACa- -3'
miRNA:   3'- -CGGGUAUUCGUGGguuGg-GCGUUGgu -5'
8090 3' -54.7 NC_001978.2 + 28053 0.66 0.6159
Target:  5'- aCCCGUcGGCGCCgGACaCUcaggGCGACCu -3'
miRNA:   3'- cGGGUAuUCGUGGgUUG-GG----CGUUGGu -5'
8090 3' -54.7 NC_001978.2 + 36905 0.66 0.6159
Target:  5'- uGCCgGUcGGCACCCugccACCUGCGGaagaaguucgcCCAg -3'
miRNA:   3'- -CGGgUAuUCGUGGGu---UGGGCGUU-----------GGU- -5'
8090 3' -54.7 NC_001978.2 + 23800 0.66 0.6159
Target:  5'- uGCCgacuaGUGgcAGCGCUCGACCCgGCGucGCCGg -3'
miRNA:   3'- -CGGg----UAU--UCGUGGGUUGGG-CGU--UGGU- -5'
8090 3' -54.7 NC_001978.2 + 19862 0.66 0.6159
Target:  5'- uGCgCAUuGGCGCCguGCCgGgGGCCGa -3'
miRNA:   3'- -CGgGUAuUCGUGGguUGGgCgUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 16456 0.66 0.661318
Target:  5'- aCCCGguugcgAAGUAUCUGACuCCGCAGCg- -3'
miRNA:   3'- cGGGUa-----UUCGUGGGUUG-GGCGUUGgu -5'
8090 3' -54.7 NC_001978.2 + 40304 0.66 0.661318
Target:  5'- cGCCCGUcucAGCGCCUAACagGCuuCCc -3'
miRNA:   3'- -CGGGUAu--UCGUGGGUUGggCGuuGGu -5'
8090 3' -54.7 NC_001978.2 + 33235 0.66 0.6159
Target:  5'- -----cGAGCACCCGACCgGCGAacucCCGa -3'
miRNA:   3'- cggguaUUCGUGGGUUGGgCGUU----GGU- -5'
8090 3' -54.7 NC_001978.2 + 19747 0.66 0.649978
Target:  5'- gGCCCAguccauGCCCAGCgCGCgAGCCu -3'
miRNA:   3'- -CGGGUauucg-UGGGUUGgGCG-UUGGu -5'
8090 3' -54.7 NC_001978.2 + 29198 0.66 0.654517
Target:  5'- aCCCGUGacggacacagugacaAGC-CCCGugCCGCGcgcuucacgcuGCCAa -3'
miRNA:   3'- cGGGUAU---------------UCGuGGGUugGGCGU-----------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 18613 0.66 0.638621
Target:  5'- uGCCCGacUGAGCGC---GCCCGauaaGACCGa -3'
miRNA:   3'- -CGGGU--AUUCGUGgguUGGGCg---UUGGU- -5'
8090 3' -54.7 NC_001978.2 + 12208 0.66 0.6159
Target:  5'- uGCCCccgAUAAGgACCguGCcggagccgaCCGCAACCGu -3'
miRNA:   3'- -CGGG---UAUUCgUGGguUG---------GGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 33504 0.67 0.604556
Target:  5'- gGCUCAgc-GCGCggucuuucuUCGGCCCGUAGCCGu -3'
miRNA:   3'- -CGGGUauuCGUG---------GGUUGGGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 9162 0.67 0.604556
Target:  5'- aCCCA--GGCGCUUAGCCU-CAGCCGg -3'
miRNA:   3'- cGGGUauUCGUGGGUUGGGcGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 732 0.67 0.609091
Target:  5'- cGCCCuuguuggcGUAGGCGCCgAaggugaagccgacgaGCCgGUAACCGu -3'
miRNA:   3'- -CGGG--------UAUUCGUGGgU---------------UGGgCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 30372 0.67 0.581955
Target:  5'- cGCgCcgAAGcCGCCCGGCUCGCGuggcaggguGCCGu -3'
miRNA:   3'- -CGgGuaUUC-GUGGGUUGGGCGU---------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 7885 0.67 0.567354
Target:  5'- uUCCGUGuGCucgACCCGggcgacggcgugacGCCCGCAAUCAa -3'
miRNA:   3'- cGGGUAUuCG---UGGGU--------------UGGGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 33206 0.67 0.55953
Target:  5'- -gCCGUA-GCGCCCAACuCCGUucaggacauGCCGa -3'
miRNA:   3'- cgGGUAUuCGUGGGUUG-GGCGu--------UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.