miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8090 3' -54.7 NC_001978.2 + 40866 0.67 0.566235
Target:  5'- cGCCCGgcuucuuauugaaGAGCGCUCGACCCuCAaugacGCCGa -3'
miRNA:   3'- -CGGGUa------------UUCGUGGGUUGGGcGU-----UGGU- -5'
8090 3' -54.7 NC_001978.2 + 40304 0.66 0.661318
Target:  5'- cGCCCGUcucAGCGCCUAACagGCuuCCc -3'
miRNA:   3'- -CGGGUAu--UCGUGGGUUGggCGuuGGu -5'
8090 3' -54.7 NC_001978.2 + 39206 0.69 0.472915
Target:  5'- -aCCGcuucAAGCGCCUggGACCCGgCAACCGu -3'
miRNA:   3'- cgGGUa---UUCGUGGG--UUGGGC-GUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 36905 0.66 0.6159
Target:  5'- uGCCgGUcGGCACCCugccACCUGCGGaagaaguucgcCCAg -3'
miRNA:   3'- -CGGgUAuUCGUGGGu---UGGGCGUU-----------GGU- -5'
8090 3' -54.7 NC_001978.2 + 36665 0.7 0.406835
Target:  5'- aGCCC-UGAGCGCCCcugagccggucgcggAACCUG-AGCCGg -3'
miRNA:   3'- -CGGGuAUUCGUGGG---------------UUGGGCgUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 36446 0.71 0.366129
Target:  5'- aGCCC---AGCACCCAGCCgG--ACCAu -3'
miRNA:   3'- -CGGGuauUCGUGGGUUGGgCguUGGU- -5'
8090 3' -54.7 NC_001978.2 + 35643 0.7 0.393577
Target:  5'- gGCUUGUAcAGCGCCCAGCUCGaccccgaaGACCGg -3'
miRNA:   3'- -CGGGUAU-UCGUGGGUUGGGCg-------UUGGU- -5'
8090 3' -54.7 NC_001978.2 + 35274 0.73 0.255419
Target:  5'- cGCCCGUGuccuuccGGCGCCCGaugauccugaACCCGUcguACCGg -3'
miRNA:   3'- -CGGGUAU-------UCGUGGGU----------UGGGCGu--UGGU- -5'
8090 3' -54.7 NC_001978.2 + 34660 0.68 0.548407
Target:  5'- aGCCCcguuGCACCCGGCaCgguucggagUGCGACCGg -3'
miRNA:   3'- -CGGGuauuCGUGGGUUG-G---------GCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 34180 0.66 0.649978
Target:  5'- cGCCgucgaGUGcGCGCCCAACUC-CGACUAu -3'
miRNA:   3'- -CGGg----UAUuCGUGGGUUGGGcGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 33504 0.67 0.604556
Target:  5'- gGCUCAgc-GCGCggucuuucuUCGGCCCGUAGCCGu -3'
miRNA:   3'- -CGGGUauuCGUG---------GGUUGGGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 33235 0.66 0.6159
Target:  5'- -----cGAGCACCCGACCgGCGAacucCCGa -3'
miRNA:   3'- cggguaUUCGUGGGUUGGgCGUU----GGU- -5'
8090 3' -54.7 NC_001978.2 + 33206 0.67 0.55953
Target:  5'- -gCCGUA-GCGCCCAACuCCGUucaggacauGCCGa -3'
miRNA:   3'- cgGGUAUuCGUGGGUUG-GGCGu--------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 33055 0.75 0.200718
Target:  5'- cGCCCGUGcGCuacuGCCCAACgCCGC-GCCGg -3'
miRNA:   3'- -CGGGUAUuCG----UGGGUUG-GGCGuUGGU- -5'
8090 3' -54.7 NC_001978.2 + 31401 0.71 0.348577
Target:  5'- aGCUCAgcggaaGAGCGCCgCAACCCGgGACgCGa -3'
miRNA:   3'- -CGGGUa-----UUCGUGG-GUUGGGCgUUG-GU- -5'
8090 3' -54.7 NC_001978.2 + 30981 0.68 0.536253
Target:  5'- uUCCAUGucGCACCCGucaccguGCCCGUAgucggucacGCCAc -3'
miRNA:   3'- cGGGUAUu-CGUGGGU-------UGGGCGU---------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 30847 0.66 0.649978
Target:  5'- aGUCCAUGGGCGCCacuCagCGCGACa- -3'
miRNA:   3'- -CGGGUAUUCGUGGguuGg-GCGUUGgu -5'
8090 3' -54.7 NC_001978.2 + 30372 0.67 0.581955
Target:  5'- cGCgCcgAAGcCGCCCGGCUCGCGuggcaggguGCCGu -3'
miRNA:   3'- -CGgGuaUUC-GUGGGUUGGGCGU---------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 29198 0.66 0.654517
Target:  5'- aCCCGUGacggacacagugacaAGC-CCCGugCCGCGcgcuucacgcuGCCAa -3'
miRNA:   3'- cGGGUAU---------------UCGuGGGUugGGCGU-----------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 28053 0.66 0.6159
Target:  5'- aCCCGUcGGCGCCgGACaCUcaggGCGACCu -3'
miRNA:   3'- cGGGUAuUCGUGGgUUG-GG----CGUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.