Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8090 | 5' | -57.4 | NC_001978.2 | + | 112 | 0.67 | 0.449471 |
Target: 5'- --cGGGUCguUGGCCUGGgggGCGCCUGGg- -3' miRNA: 3'- caaCUCAG--GCCGGACU---UGCGGGCUgc -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 866 | 0.69 | 0.374737 |
Target: 5'- --cGAGugcUCCGgcGCCUGGGCGCgCGACu -3' miRNA: 3'- caaCUC---AGGC--CGGACUUGCGgGCUGc -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 3247 | 0.66 | 0.531713 |
Target: 5'- -cUGAGacagaaugucgaUCCGGCCcauacCGCCCGGCu -3' miRNA: 3'- caACUC------------AGGCCGGacuu-GCGGGCUGc -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 5174 | 0.66 | 0.553163 |
Target: 5'- -cUGAGcgCCGGagcccgaacCCUGAAgGCCgGACa -3' miRNA: 3'- caACUCa-GGCC---------GGACUUgCGGgCUGc -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 5305 | 0.67 | 0.449471 |
Target: 5'- --aGGGUCCGGCuCaGAACGUUCGGg- -3' miRNA: 3'- caaCUCAGGCCG-GaCUUGCGGGCUgc -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 9205 | 0.68 | 0.38361 |
Target: 5'- --gGGGcucguUCCGGCCgGAGCGacggCCGACGa -3' miRNA: 3'- caaCUC-----AGGCCGGaCUUGCg---GGCUGC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 10278 | 1.08 | 0.000552 |
Target: 5'- cGUUGAGUCCGGCCUGAACGCCCGACGc -3' miRNA: 3'- -CAACUCAGGCCGGACUUGCGGGCUGC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 11191 | 0.71 | 0.265533 |
Target: 5'- --gGGGUCgaCGGCUUGcuuacGAUGCCCGACGu -3' miRNA: 3'- caaCUCAG--GCCGGAC-----UUGCGGGCUGC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 11333 | 0.69 | 0.366003 |
Target: 5'- -cUGAGUUcaCGGaagcCCUGAACGCCCuucaGGCGg -3' miRNA: 3'- caACUCAG--GCC----GGACUUGCGGG----CUGC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 15271 | 0.68 | 0.401769 |
Target: 5'- aUUGccGGUCCGGUcguCUGcACGCUCGAUGa -3' miRNA: 3'- cAAC--UCAGGCCG---GACuUGCGGGCUGC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 16151 | 0.66 | 0.510571 |
Target: 5'- aGUUGcGUCCGGCguugccacgCUGGGCa-CCGACGg -3' miRNA: 3'- -CAACuCAGGCCG---------GACUUGcgGGCUGC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 17830 | 0.69 | 0.340656 |
Target: 5'- cGUUGGGcuacUCCGGCaaGGACGCUgaCGGCGu -3' miRNA: 3'- -CAACUC----AGGCCGgaCUUGCGG--GCUGC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 18032 | 0.68 | 0.411052 |
Target: 5'- ---cGGUCCGGUCcGggUGCCCaGugGa -3' miRNA: 3'- caacUCAGGCCGGaCuuGCGGG-CugC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 20958 | 0.67 | 0.479545 |
Target: 5'- ----cGUCCGGCCguagcgggGAAgcucgauucccUGCCCGGCGu -3' miRNA: 3'- caacuCAGGCCGGa-------CUU-----------GCGGGCUGC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 21526 | 0.67 | 0.449471 |
Target: 5'- -cUGAGgCUGuacgcgacGCCUGAGCGCCCGuCu -3' miRNA: 3'- caACUCaGGC--------CGGACUUGCGGGCuGc -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 22668 | 0.68 | 0.411052 |
Target: 5'- -cUGAGUgCCGGUCaccauGCGcCCCGACGc -3' miRNA: 3'- caACUCA-GGCCGGacu--UGC-GGGCUGC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 24169 | 0.66 | 0.531713 |
Target: 5'- cGUUGAcUCCGGUUacggccugggUGAGCGCaaGACGc -3' miRNA: 3'- -CAACUcAGGCCGG----------ACUUGCGggCUGC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 35483 | 0.66 | 0.553163 |
Target: 5'- --cGGcGUUCGGCCUGGgaGCGCUCGcCu -3' miRNA: 3'- caaCU-CAGGCCGGACU--UGCGGGCuGc -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 38628 | 0.66 | 0.531713 |
Target: 5'- --cGuGcCCGGCgcuucgCUGaAAUGCCCGACGa -3' miRNA: 3'- caaCuCaGGCCG------GAC-UUGCGGGCUGC- -5' |
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8090 | 5' | -57.4 | NC_001978.2 | + | 40671 | 0.79 | 0.081266 |
Target: 5'- aGggGAGUgaCCGGCCUGAguggguaGCGCUCGACGc -3' miRNA: 3'- -CaaCUCA--GGCCGGACU-------UGCGGGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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