miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8090 5' -57.4 NC_001978.2 + 17830 0.69 0.340656
Target:  5'- cGUUGGGcuacUCCGGCaaGGACGCUgaCGGCGu -3'
miRNA:   3'- -CAACUC----AGGCCGgaCUUGCGG--GCUGC- -5'
8090 5' -57.4 NC_001978.2 + 11333 0.69 0.366003
Target:  5'- -cUGAGUUcaCGGaagcCCUGAACGCCCuucaGGCGg -3'
miRNA:   3'- caACUCAG--GCC----GGACUUGCGGG----CUGC- -5'
8090 5' -57.4 NC_001978.2 + 9205 0.68 0.38361
Target:  5'- --gGGGcucguUCCGGCCgGAGCGacggCCGACGa -3'
miRNA:   3'- caaCUC-----AGGCCGGaCUUGCg---GGCUGC- -5'
8090 5' -57.4 NC_001978.2 + 15271 0.68 0.401769
Target:  5'- aUUGccGGUCCGGUcguCUGcACGCUCGAUGa -3'
miRNA:   3'- cAAC--UCAGGCCG---GACuUGCGGGCUGC- -5'
8090 5' -57.4 NC_001978.2 + 18032 0.68 0.411052
Target:  5'- ---cGGUCCGGUCcGggUGCCCaGugGa -3'
miRNA:   3'- caacUCAGGCCGGaCuuGCGGG-CugC- -5'
8090 5' -57.4 NC_001978.2 + 21526 0.67 0.449471
Target:  5'- -cUGAGgCUGuacgcgacGCCUGAGCGCCCGuCu -3'
miRNA:   3'- caACUCaGGC--------CGGACUUGCGGGCuGc -5'
8090 5' -57.4 NC_001978.2 + 16151 0.66 0.510571
Target:  5'- aGUUGcGUCCGGCguugccacgCUGGGCa-CCGACGg -3'
miRNA:   3'- -CAACuCAGGCCG---------GACUUGcgGGCUGC- -5'
8090 5' -57.4 NC_001978.2 + 24169 0.66 0.531713
Target:  5'- cGUUGAcUCCGGUUacggccugggUGAGCGCaaGACGc -3'
miRNA:   3'- -CAACUcAGGCCGG----------ACUUGCGggCUGC- -5'
8090 5' -57.4 NC_001978.2 + 35483 0.66 0.553163
Target:  5'- --cGGcGUUCGGCCUGGgaGCGCUCGcCu -3'
miRNA:   3'- caaCU-CAGGCCGGACU--UGCGGGCuGc -5'
8090 5' -57.4 NC_001978.2 + 11191 0.71 0.265533
Target:  5'- --gGGGUCgaCGGCUUGcuuacGAUGCCCGACGu -3'
miRNA:   3'- caaCUCAG--GCCGGAC-----UUGCGGGCUGC- -5'
8090 5' -57.4 NC_001978.2 + 10278 1.08 0.000552
Target:  5'- cGUUGAGUCCGGCCUGAACGCCCGACGc -3'
miRNA:   3'- -CAACUCAGGCCGGACUUGCGGGCUGC- -5'
8090 5' -57.4 NC_001978.2 + 40671 0.79 0.081266
Target:  5'- aGggGAGUgaCCGGCCUGAguggguaGCGCUCGACGc -3'
miRNA:   3'- -CaaCUCA--GGCCGGACU-------UGCGGGCUGC- -5'
8090 5' -57.4 NC_001978.2 + 866 0.69 0.374737
Target:  5'- --cGAGugcUCCGgcGCCUGGGCGCgCGACu -3'
miRNA:   3'- caaCUC---AGGC--CGGACUUGCGgGCUGc -5'
8090 5' -57.4 NC_001978.2 + 22668 0.68 0.411052
Target:  5'- -cUGAGUgCCGGUCaccauGCGcCCCGACGc -3'
miRNA:   3'- caACUCA-GGCCGGacu--UGC-GGGCUGC- -5'
8090 5' -57.4 NC_001978.2 + 5305 0.67 0.449471
Target:  5'- --aGGGUCCGGCuCaGAACGUUCGGg- -3'
miRNA:   3'- caaCUCAGGCCG-GaCUUGCGGGCUgc -5'
8090 5' -57.4 NC_001978.2 + 112 0.67 0.449471
Target:  5'- --cGGGUCguUGGCCUGGgggGCGCCUGGg- -3'
miRNA:   3'- caaCUCAG--GCCGGACU---UGCGGGCUgc -5'
8090 5' -57.4 NC_001978.2 + 20958 0.67 0.479545
Target:  5'- ----cGUCCGGCCguagcgggGAAgcucgauucccUGCCCGGCGu -3'
miRNA:   3'- caacuCAGGCCGGa-------CUU-----------GCGGGCUGC- -5'
8090 5' -57.4 NC_001978.2 + 38628 0.66 0.531713
Target:  5'- --cGuGcCCGGCgcuucgCUGaAAUGCCCGACGa -3'
miRNA:   3'- caaCuCaGGCCG------GAC-UUGCGGGCUGC- -5'
8090 5' -57.4 NC_001978.2 + 3247 0.66 0.531713
Target:  5'- -cUGAGacagaaugucgaUCCGGCCcauacCGCCCGGCu -3'
miRNA:   3'- caACUC------------AGGCCGGacuu-GCGGGCUGc -5'
8090 5' -57.4 NC_001978.2 + 5174 0.66 0.553163
Target:  5'- -cUGAGcgCCGGagcccgaacCCUGAAgGCCgGACa -3'
miRNA:   3'- caACUCa-GGCC---------GGACUUgCGGgCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.